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16-1084-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16647919 [Map]; Strand: c
      • AT2G39870.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 2542; Region: intergenic
      • AT2G39880.1 - [+] show detail - myb domain protein 25
        Distance: 26; Region: intergenic
    Flanking Genome Sequence: 16-1084-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGGATTT 
    TCCCATCCTA CTTTNAGCCN NNNTTAGAGA CAAAACAATN CATTTAATAT 
    CTCTTTGTTA ATTATTNTTA CCAGATCATA NAAGATTGCA TTCCTGGGAA 
    ATTCTTCAAG GCAAATAGAA AAAATTCAAA AAAAGTGCAT TTTACTAAAG 
    TGAATGATTT CTTGTTTTTC GACATTTTGA CTTCAATAGG ATATGTTCAT 
    TTTGGGCATC TACGTAGGAA GGATGTATGA GAATGGGATT CTCATTTTGA 
    GGTCAATAGG ATATTCTCAG AAGTTCAGAA CTATTAAAAT GGATCGTAAC 
    CAGAACATGG GGCAAGTTTA GGCCTTAGAA AGCCCACAAA ATGCCTCAGG 
    GATAACATGT ATACAATTTA ATTATTTAGA TTTGGTTAGT TGTATTAACA 
    AAAACTGTAT ATTTTTACAT CAATTCCATA CTATATAGAT AAAATACTGG 
    TGAAAATTGT ATTATAAAAT ATCTCAATTT TTTGTTTCTT ACCAAAATTG 
    TCACCGTGAG TGACAATATT ATTTACGTGA TCCAAGTTTT TCCGTTTGTT 
    TGTAATATAG AAAAATAAAA AGAAGAAACA TTATCCAATT GCTTAAAAAG 
    GAATCCAAAT TCTCCATGAA TCAGATAACG AAGATTGANT NTGGCTTTTG 
    CTTTACTCAC ACTGCTCCAT ATTTATTTNT GGACGCCTTG NCCGTCCTTT 
    GANANACATA ATGGNGGAAT AATTTTTTTT TTTCNAAAAT TNTCANCNAT 
    NCACCANGGT GACCCCCCCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10605471 [Map]; Strand: c
      • AT4G19440.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -951; Region: promoter
      • AT4G19440.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -951; Region: promoter
      • AT4G19450.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -982; Region: promoter
    Flanking Genome Sequence: 16-1084-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATGGGTGCTT GTCAAGCTAT CACCACAAGT TCACTAAATA TAGTATATAT 
    TTTTAAAACA AATACCAACA CTTTCATTAA AAGCACATAA ATGGAAACAT 
    TTAAGAGGAC ACATACAAGT CCCATTGATT ATTTTTATTT TTTGACCAAA 
    TACTAACACA CCTTTAAAAA TAAGAAAATG CTAACACTTG CAGTAAAAGT 
    GATACTACTA AATATAGATA TTTTAAGAGA ACATGATACA ATTAATTCTT 
    AAATACNTGT ATTGTTTTAA ATTTTATACT TTTATAGTTT CTAATTATTA 
    AAATACATTA TCATTATAAT ACACAATTTT CATACCATAT GTCAATTAAG 
    AGTATCAATA ATAATAGTCC ACTTATGTGT AGATATGTCA GACCTATTTT 
    TATGAAGTAT CATAAATAAT GTATGCACAC ATCACAATCG TAAACAAATT 
    ACTACTCTTT CTATTTCATA AAGTTTGATG TTTTAAGTTT TGCACATAAA 
    TTAAAAAAAA AGTAACTTTT ATATATATTN AATTATTATT CTGTTAGTTT 
    AATAATATTA TTATTACCTC TGTCCTTTCA CTATTGACTA CAAACAAAAC 
    TTACAATCAT ATTTTTACAA AACATCAATT TTGATGAAAC AAGTAAAAAT 
    TTCAAAACAT CAAATAACTC GGAACAGAAT GAGTAAATTT TTAGCTCACT 
    CTTTTAACCA TAGNGCCTAC TATCTTTAAC CATCTNCAAA ANACACCATT 
    TGTCTTTTAA CTTTC

AT2G39870.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1); Has 73 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G39880.1

Model type
Protein coding
Short Description
myb domain protein 25
Curator Summary
Encodes a putative transcription factor (MYB25).
Computational Description
myb domain protein 25 (MYB25); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 109 (TAIR:AT3G55730.1); Has 8881 Blast hits to 7992 proteins in 491 species: Archae - 0; Bacteria - 0; Metazoa - 834; Fungi - 531; Plants - 5628; Viruses - 6; Other Eukaryotes - 1882 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19440.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19440.2

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1).
Link
InterPro Scan - TAIR

AT4G19450.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G45275.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR