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Mutant Lines
16-1157-1

16-1157-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 19669608 [Map]; Strand: w
- AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: 0; Region: exon1 (CDS)
- AT2G48100.1 - [+] show detail - Exonuclease family protein
  Distance: -893; Region: promoter
- AT2G48100.4 - [+] show detail - Exonuclease family protein
  Distance: -893; Region: promoter
- AT2G48100.3 - [+] show detail - Exonuclease family protein
  Distance: -947; Region: promoter

TTCAGAGCAG TGACTAGTCC TGTCCGAACC GTTCGTCGCA TCTCCACCAA 
ATCTTCACCA GCAGAGGCTG TTCGCGTCAA ATTTGCAGAG ACATCGGCTA 
GGCCTAGGGC AGCCAAACCC ATTACAAAGG TGGAACCNGG TGATCGCTCG 
AGTGGATACT ACGATCAAAA CGGACGAGAG GTTCACCGAG TATATAAAGA 
AAGCGAAGCT GAAGATAAGG GCGATGACGA ATGTCGGTGA TATGATGAAG 
GAGGATGCGT GGGAGACAAG TGATGAAACA GATCAGACAC GTCATGATCA 
TCGTCACCAC CATGTGCCTA TCTCTCACGT AGGTAGTAGT GGCCGGAGAT 
CATCAGATCA GTTCTCTGAG TACATAAAGA AGGCAAAGAT GAAGCTCAGT 
TCCTCTTCCA CCATTGCTCG TGCTAACCCG ACTTTCAAGT GATGGATTTC 
GACAAATTAA TGATTTGAAT AATCCTCTGG CCTGAGAGAT TGATATATAT 
GTATATGTTT TGTGGTGTGT GTTGACAAGT ACGGACATGG ATTTGTCGTT 
TTAATGAAAA CTATAATACT AGTGATCATT TTAATAATTT TGTTGTTACA 
TCGGTAGCGA GTGGTTTCTT TTCTTAAGAA TCATTATATG GGCTGTGAAT 
GGGCCGCCAA AGAAGAGTCT GTTTAAGTTG ATAAAGATGA TAATAAAATG 
ATAATGATGA GAAAGCT

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19669724 [Map]; Strand: w
  - AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: 0; Region: exon1 (CDS)
  - AT2G48100.1 - [+] show detail - Exonuclease family protein
    Distance: -777; Region: promoter
  - AT2G48100.4 - [+] show detail - Exonuclease family protein
    Distance: -777; Region: promoter
  - AT2G48100.3 - [+] show detail - Exonuclease family protein
    Distance: -831; Region: promoter
  - AT2G48100.2 - [+] show detail - Exonuclease family protein
    Distance: -961; Region: promoter
Flanking Genome Sequence: 16-1157-1 - 5-prime edge
```
GCTCTGAAGA TCTTCTCGCA CACTCTGTTT TCTTGCTTCT TCTTGCTACT 
ACTCTGTGAT GATGAGTTCT TTGCCATGGA TGTCACCTTG GGAAGTACTA 
AAGGTGATCT GTGCAGAGAA GATAGTGACA TTAACGAGCN TTTTTATAAT 
GCAAAATCTA TGTGATTTTA TCTTTGTTAA TTGCAGAATA ACGTGTTTCA 
ACATGCAACA AGCGAAGAAA TTACAACTTG TTGAAAAGAG GAAAGTTGGA 
AACTTTTACA AGTTTTTCAA AAAAGGAAGA GTGATGTTAG AAAGGGATCG 
GATTCTGATT CCACTATGTT TTCTTTCTTT CTTTCTTCTT CGTTGTTTTT 
GTTTTGGATT GTTACGTTCC TGTCAGGATT TGAGAATCAT GCATCAGCTG 
TCACTCCTCT CAGGAGGGGG AGATTATATC TACTTGTAAC ATACTAATCT 
TCCAATAAAT AAGCACTTCA CATATTATTA AAATACAGTA GATTCTCATA 
ATTAGGCCAT TTTCCATAAG CT
```

AT2G48090.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, root, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.1

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.2

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.3

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.4

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR