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16-1271-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14823673 [Map]; Strand: w
      • AT2G35160.1 - [+] show detail - SU(VAR)3-9 homolog 5
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-1271-1 - 3-prime edge 
    GGTGAAAACT CACTTTCCGC AGCAACCTTA AACCGCTTGG ACTTCCTCCG 
    TCCCATAGGA TCGGTGTAAC TACCATTTAT TGCTAGTTCA TCCTTAGAAC 
    AAGGAATACC ACCGCCATCA CCACCGCGCA AGGAACTAAG TATTGATGAC 
    TCTGAATGTA CCATGATGCC CAACGCCTAC TCAATGTAAT ACAAGAATAT 
    GAACTAAAAA CACCATCCTA GTAAGTTACA ACAAAGCATA TTAATTAAAA 
    AACACCATCC TAGATTCCTA GTAGTTACAA GAACGCGTAT TGATTAGAAA 
    AGATTGCAAT CAATTAAATT GAATATCTTT GGCAATGCAT GTTATGATGA 
    TCTAAGTTCA TCATCACAAT TAACCAACAA AAGAAGACAT GCAGATCTTC 
    AAAACCCATG ATACAGTTTT GAGTAACATG TGAACGAATC AGTACGCATT 
    AATCCATGAA TCATAAGAAA TCCTTATCCA CATTTTCCAG AAACAGACTC 
    CAAATCTCGA AATTATCAAC TTTTAAAATT GTTAATCAAT CGAGAGATGG 
    AAGCGATTGA TAAGATCAAT TTCGAGTCTA CAAGTAACAA AAAATAAAAG 
    AATGAAGAAT AGAGAAGAAG GGTACAAAGA TTTACCAGAA ATGAAGGAAG 
    GAGTAGTGAT AATGGCGGAG ATGACGAGTC GATTGGCCGG AGCGGGAGAT 
    ATGTGAGTCG CCTACTCAAA TTGGGTTAAT TTGGCATTGT CCTGCAAACA 
    AACTAACAAT CATTTTATT

AT2G35160.1

Model type
Protein coding
Short Description
SU(VAR)3-9 homolog 5
Curator Summary
Encodes SU(var)3-9 homologue 5 (SUVH5). SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.
Computational Description
SU(VAR)3-9 homolog 5 (SUVH5); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: maintenance of DNA methylation, histone methylation, regulation of gene expression, epigenetic, response to chitin, chromatin silencing by small RNA; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 6 (TAIR:AT2G22740.1); Has 5295 Blast hits to 5101 proteins in 461 species: Archae - 0; Bacteria - 388; Metazoa - 2414; Fungi - 548; Plants - 1120; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).
Link
InterPro Scan - TAIR