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16-1283-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18449065 [Map]; Strand: c
      • AT3G49740.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-1283-1 - 3-prime edge 
    TTAAAACTTG ATTCAAGTTT GGGCTTAGTT CAAAGATTGA AATTTCCAAT 
    GCGTTGATAT CTGCCTACTC GAAGAATGGA CAGATAGAAA AAGCTGACCT 
    ATTATTTGAA AGATCTCTGA GGAAGAATCT TATCTCATGG AATGCGATAA 
    TCTCAGGGTT TTACCATAAC GGGTTTCCTT TTGAAGGTTT GGAAAGGTTC 
    TCGTGCTTGC TAGAGTCAGA GGTCCGAATC CTACCTGATG CTTATACTCT 
    CAGTACCCTT TTGAGCATTT GCGTAAGCAC TTCATCTTTG ATGCTCGGAA 
    GCCAAACTCA CGCTTACGTC CTTAGACACG GCCAATTCAA GGAGACATTG 
    ATAGGTAATG CCCTCATAAA CATGTACTCT CAATGCGGGA CTATACAAAA 
    CTCTCTTGAA GTGTTCAATC AGATGTCTGA AAAAGATGTT GTGTCATGGA 
    ATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18449002 [Map]; Strand: c
      • AT3G49740.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-1283-1 - 5-prime edge 
    GNTNAAAAAC TAACAAAATC CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCT CCAGGACATC TAAATCCAGA GAGGTTGCTA 
    AAAGACTTCC AAAAGTAAAC TCATCCGGTT TAACTCCTAT TATGTGCATT 
    CTCTTGTATA CCGACATCGC AGACTTGCCC AATTTCGCTT GGTTATAACT 
    TTGAGATCAT TGTGTTCCAA GTAACCAAGT CTTTCTCTTC CAATGACTCA 
    AAAACCTTAT GAGCCGCACC AAAATCTTCA AAAGAAGAAT ACATTGTCAT 
    AGTGGCATTG CTAACAAAAG TATACTTCTC ATAACCTGTC TTGATGGCTA 
    GTCCATGTAC TTTGGTGTCC CATAGCCGCA CATGAACATG AACCCATAAC 
    ACTAACAAAG GTCAAATCGG TTGGTCTAAG ACTAGCTTCT AGCATTTTTC 
    TAAACACCAA CAAAGACTCG TCTNTTTTGA AACCAGCCAA ACCATCAATA 
    ACCACATTAA AAGTACCCTG ATCACGAACA GCAACATCAG TTTNTTCAAA 
    CACCAGACAA GCATCAACAA CCACTTGGGC ANTGGAGATA CATTGGAATT 
    TAGNGCNTTC NCAACAGGAT GGAAGCANTA AAAATTCCNG CTTTTTTTAA 
    CCAGGGAAAG GCNCCTGGNT TACCAAAATC CAAGAAACCN TNGTCNCCCN 
    TTCTCAAAAT AGNNNCAAGC CCCAAACTTT NTTNTGGTNN AANNCCAAGN 
    TACCANNCCG GGCCGNTAGG CCCNCGGGGC CCNTNAAA

AT3G49740.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02010.1); Has 46649 Blast hits to 13426 proteins in 218 species: Archae - 0; Bacteria - 21; Metazoa - 50; Fungi - 114; Plants - 45895; Viruses - 0; Other Eukaryotes - 569 (source: NCBI BLink).
Link
InterPro Scan - TAIR