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16-1288-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29150769 [Map]; Strand: c
      • AT1G77590.1 - [+] show detail - long chain acyl-CoA synthetase 9
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 16-1288-1 - 5-prime edge 
    CATGGATGAT GAATTCCCAT CTGATGTGAA CAGTAATTGG ATGGCGACTT 
    CATTTACTGA TGTTCAGAAA CTTGGCCGCG AAAACCCTGT GGACCCTAAT 
    TTTCCTCTCT CAGCAGATGT TGCTGTTATA ATGTACACCA GTGGAAGCAC 
    TGGACTTCCC AAGGTTAGAA GGTTTTCGAA ACCAGTTTAC GTGTACATAN 
    TGTTGTCTCA GAATAAGAAT TTTGTCTATC GTTATAAAAA TTGTCGTATC 
    AGCTATTTGT TATTGGTTCT GCAAAATTTA CTCAAATCTG ACTTTCCCAC 
    TTACCAAATT GTGTAGGGTG TTATGATGAC GCATGGTAAT GTCTTAGCTA 
    CAGTTTCGGC AGTGATGACA ATTGTTCCTG ACCTTGGAAA GAGGGATATA 
    TACATGGCAT ATTTACCTTT GGCTCACATC CTTGAATTAG CAGCTGAGGT 
    ATCTTAAAAA ATCATTACTC AATGCGTTTA TATAGCAGTT CCACACTTCA 
    GAGTATTTGA ATGCAGCCTA ATATCATTGT TGTAGAGCGT AATGGCTACT 
    ATTTGGGAGT GCTATTGGAT ATGGGTCTCC CTTGACGCTA ACGGATACTT 
    CAAACAAGAT AAAAAANGGG TACAAAAGGA AATGTCACAA GCACTAAAGC 
    CCACTATAAT GACAGCTGNT CCACCCNTTT CTTGATCGTN TNAAGGGATG 
    GGNGNNCCCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29150839 [Map]; Strand: c
      • AT1G77590.1 - [+] show detail - long chain acyl-CoA synthetase 9
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 16-1288-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATC 
    CATGCATATC ACACGTTTCA CAGTTTCAAG CTGTTGGCTT ATGTCCATGA 
    GCTTTTTGAG TTCTTTGCTA CCACATATTA CGGTTGTGAC CTCTGTCTGG 
    AAAGTGAAAG AAAGGGAATC ATGAACATAT GAAAGGTAAG CATACACAAA 
    TATGAAAAAT ACTAATCCAC ATGATAACAT AGAGCTCATT CCAACCTATG 
    TGAATCTTAT ACCAGAAACA ATCAAGACAT AAACAGCCGC AAAGCATATA 
    CNGGCATGGG TTTAGGTCGC CATATTAAAG AGAAAGCAGA GAAGAGGAGC 
    AAGGGCTACC TCATTCAGCG AGTGACAAAG AGCTTCCTCT CCCAAAGATG 
    AATAGATAGT TACCACAGTG ACGTTGCGCC TGAAGCAACC CTGAAACATT 
    GAATAACACA GAAAATTTCA TAACCGTAGC AACCAGTCCA TTCGGATTAA 
    AGCAGAGAAA ACAGGAAAAA GGTATTAAAA AATGGAAAAT CACCTGTAGG 
    GAAATGAACC ACTCTTCTCT AGTATCTGCA AAAATGGCCA CACGCTCTTC 
    CGTCTTGTGC CCAATCTGAA CTAACCCAGA GGCAAAATCA CACACTGCTT 
    CGAGAGTCTT CCCAAAAGTG AGCCACTCGT AGTCACCTAA ATGCAGTTTC 
    TCGAACGTTT TTCCATCCTC ACTAGTCTNA ATCTCTCTAN AGATCAGCTT 
    CCGGGTGCCA AGGAAACCCC TATCACT

AT1G77590.1

Model type
Protein coding
Short Description
long chain acyl-CoA synthetase 9
Curator Summary
Encodes major plastidic long chain acyl-CoA synthetase with a slight substrate preference of oleic acid over any of the other fatty acids.
Computational Description
long chain acyl-CoA synthetase 9 (LACS9); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G04350.2); Has 68698 Blast hits to 57242 proteins in 3549 species: Archae - 1129; Bacteria - 47028; Metazoa - 2860; Fungi - 3365; Plants - 2152; Viruses - 2; Other Eukaryotes - 12162 (source: NCBI BLink).
Link
InterPro Scan - TAIR