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16-1293-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30055400 [Map]; Strand: w
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 16-1293-1 - 5-prime edge 
    TATGGCAGCC TCTATTGCGT CTTTTTTGTT TGTTTGGAGT TATAGACACG 
    TTATTCATGT CCTCTATCGA CTTAATGAAT CACGGGATCT TATTGGTTTT 
    CCGAACGTGA AAGCAATTAC ATTTCCATCA GAATGATTAT TTTTTCTTTT 
    GTTTTTCTTT TCTGAAAGAG GGTCAACGTA CGATGGTTTC GGTAAATCTT 
    TGTTAATTGG TTCTATTTTG GGTATAGATG GAAGCAATGC AAAAAAAAAG 
    AAATAGATAT ATTTCATTCT GATGCTGTCA CCAGCTGGTT ATAACANAGT 
    GAATTGTTGC TTAANAAATT CTTGGCCCCT GTTTTAAGTT ATAAGTCACA 
    TGAGTAAGTA CATANAGAGA TGGTTCTGAT GGCATGTGTT TGTGTGACAG 
    GCAGAAGGGC TTATAGAGGA NAAAAGGAGG CTGGCTTGTT ATGAGTTTTT 
    GGAGCAATTC TGCAACTGTG TTGCATCCAA TGTCTCTCTA TTACANAAAT 
    CCATGTAAAA ACTAACCCTA AACTTGTTTA ATTTACTTGC ATGGATTCCA 
    TTCATCTAAA TAAATATTGG GTTTTGCTTG ANCANCCGGN GCCCTGATGA 
    GTGCCGCNAG GCCATCTCCT CCCTTGTATN TGCAGCCNCT ANAGTCTCTG 
    AAGNCCCCTG ANCTACNCNA ACTNAAATNA CCACCCGGGC CGNNNANCAC 
    NCNGNCCNNN NAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30055284 [Map]; Strand: w
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-1293-1 - 3-prime edge 
    CTGCCATATG CATGTAATAA ATGGGGGTAA AAGAAAATGA TATTACCCTG 
    CCATATGCAT TGTAATCGAG GCTGTTCTTG AGAAGATCGA CAATGTCGTT 
    CTTGAGATAT TTGCAAACCG AGTTTTTCTT CCTCTTCACC GTGTCTACTC 
    TTGTCTTCGT TATCTTGACC AACGACTTGC TGAGAAATAT AATTAAAAAC 
    AATCAACGAA TGAAACCAGG AAAACGGAAA ATAAGCAGAG ACTTACCATT 
    TCGTATAAAA CTTGGGTTTG AACAGCCCAT CAAACATTTT GCCTTACGAA 
    AAAAAAACAG ACAAGGTTGN CTTCTTCTTC TTCTTCTTTT TGTTTTTTTG 
    TTTTGTTGTT TTTTTTNGGG GGTTTNGTNA TCTCTCTCTC TTTCTTCGNG 
    CNNGANAAAG AGAGAGACNG AGAGAANAAN TGNGGNCCTT TTNAAAAAAA 
    TGGCCCTTTA AGGNAAGGGA AGGGCTTTTT TNNGGAAAAA ANAGGNGGNA 
    GTGAAAAANA AAAAAANCNA CCTTGGCTTG GNTNGGNCTT ACATNAAANN 
    ACCNNCCNGG CCGNNNANCA NNCNT

AT1G79910.1

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G32350.1); Has 592 Blast hits to 592 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 147; Fungi - 112; Plants - 281; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79910.2

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G52315.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR