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16-1414-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18022510 [Map]; Strand: w
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: intron6 (CDS)
      • AT4G38540.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: -611; Region: promoter
    Flanking Genome Sequence: 16-1414-1 - 5-prime edge 
    CGAAGGATGG GATTTGGATT TCCATCATAC ACACTTTGAT CAATACTCTC 
    CTCCAGATTT CTTCGTCAAG GTAAACAACA ACTACTACTC TTCTTTTAAA 
    CTAGATTTCT TCGTAACTGT GTGTGTGTTG CATTTGCTGC ATCAGATTGG 
    AATAGCAGGA GTACCGAGAG ACACGGTCTC ATACAGAACG GAAACAGCTG 
    TCGATCAGTG GTTTCCTATA TGGGGCAACG ACGAGTTCCT GTTTCAGCTG 
    TCTGTTCCAG AACTGGCGCT TCTGTGGTTC AAAGTCCAAG ACTACGACAA 
    TGACACCCAG AATGATTTCG CAGGACAGAC ATGTCTTCCT CTGCCGGAAC 
    TGAAGTCCGG AGTTAGAGCC GTCCGGCTTC ACGATCGAAC AGGCAAGGCC 
    TACAAGAACA CGAGGCTTCT CGTCAGCTTC GCCTTGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18022394 [Map]; Strand: w
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: exon6 (CDS)
      • AT4G38540.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: -727; Region: promoter
    Flanking Genome Sequence: 16-1414-1 - 3-prime edge 
    ATCCTTCGCC AGTGTAAATC TTAACCTTAA GAGTGGTCTT AATGGGAAAC 
    CTTTTGCAAG GGTCGAAGAG TGTGTGCTCG TCTAGCAAGA TGCGAGGCTT 
    TTTAACGTAC CCACATCCAC CATTCCCCCT GAACATTCCT TGCATTATCC 
    ATAGTTGCTT CCCATGTCCC TTTTCAACAC AAATATTATT CAACCATTTT 
    TTAACAAGTC AAACGATGAT GAGCCAGTTC CACTTACTTG CATGTTAAAA 
    GCAACCATTT GAGCACCGTG TGTCCACCCA ACATGAGGAT CGTAGTTTGA 
    CGAGTCCACT CTTGTGCCCT TTGGATATAT CCTCACCAGA TTCCTCTGTG 
    TAAACCTGTT TTTGTTTTTT TTCAAACTCT GACTCAGGTT CATCTTATAA 
    CTCTTGAGTC GAAAAAGGTT CAACATTATG ACTCCTCTCA CTCTATATTT 
    TACCTGACAA GATCCGTTCC TCTGGTCCTA ACCATAGTGT CTAGCCACTG 
    CTCGTCCATG CTGACCCGTA TAGGCTTCTC TGGATCATCA CTCAAGCAAT 
    CCTTTGAAGG ATCTTTGCAG TTTGCAGCGT GGATTGCTAT CAAGTCTCTA 
    TATCCTACAG CTTCACTCTC CATATCTTTA TATTCTTCAA GAATCTTGTT 
    CGCTACTCTG TTCCACGAAG TCTCTTTAAC CGTTGGAGTT CTTGTGGTGT 
    GTACAGTTTT GCTCTCAANA TACTCCTTTG GAGGCTTCGA AAANATCANG 
    ATCTTNCCCT

AT4G38530.1

Model type
Protein coding
Short Description
phospholipase C1
Curator Summary
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
Computational Description
phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38540.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G05320.1); Has 5392 Blast hits to 5382 proteins in 1070 species: Archae - 48; Bacteria - 3093; Metazoa - 5; Fungi - 1172; Plants - 539; Viruses - 0; Other Eukaryotes - 535 (source: NCBI BLink).
Link
InterPro Scan - TAIR