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16-1465-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1372997 [Map]; Strand: c
      • AT1G04860.1 - [+] show detail - ubiquitin-specific protease 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-1465-1 - 5-prime edge 
    GTTANNGCAC ATGTCCAGCG TACCAGNCCG GGCCGNTGAC CACGCGGGNC 
    CTATANCGAG GCNNATGACN GCGGCNNCNN CAAAAAANGA AGCAANGCAG 
    ACGATNNACA TACTATCTAT CTCTCCGNCT AAACCAATTG ATTAGGCTAG 
    ATCCCAATTC TTCGAGTATC GATTCTTCTT CAATCCTTTT TATGTGAATA 
    TTCTCCTAAA GCAGCAACCT CTTGGGTTCT TCTTCTTCTG GGTAAAATTC 
    TCTGGATTCT GCTTTTGCTT TGATACGATT GTTTTGAGCT ACTTGTTTTT 
    TTTGGTTCCT GATTGCGTTA AGGGTCAGGA GGCTTAGTAG AACTAAGATA 
    TGAAATCTTA ATCTGAGTTA TTTCGATGCA TAGACTTTGG ATTCTGGATC 
    TTTGAGTACT AGTCATTAAA AAGTCGGATA ATTTCTNTGT AGGGTACTTC 
    TTAGAATACT GATTTGATTT GATTTTATGG TTAATTCTCA GTTCGTGATA 
    ATTCTTAAGA CTTTTTTAGT GGTATGTCTT ANAATCATGG AATTGAAATG 
    GGCAGGNTTC NATTTTTGAA GGNGGATATT GATTTTNAAT CCATATATGC 
    GGTGATGGAT GNGGGATAAG TTTTCTNGAG GCTTTATCTG GGCATNGGGG 
    ATAGTTCNNA AAGTTTNTCT GNTNGNANCA CTTTNNNGNT TTGCTNAGTG 
    GAATTNGATT ATGANAANGC ATNACAANTT TANNAACCCA ANCTNCNNTA 
    NT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1373078 [Map]; Strand: c
      • AT1G04860.1 - [+] show detail - ubiquitin-specific protease 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-1465-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATAGGCTCTC CCAACACAAC TCTATCGACC AAATATTTGG TTCGTAAATA 
    TTAATAATTA CTCCAAAACA AATCTTTAAA CATTTAGTTC GATATTAATT 
    AAACCAAAAA AATGTTTTTT TAGACTTTAA CAAATATTCT AAACCACTTG 
    AAAAATGTTC AAAAAAGTTA AACAATCTTC ACAGAAAAAA AATCTCTTCA 
    AAATTAATAC CGAAGAAATT TTTGGATGTT TAATCAAATA CCAAAAATAA 
    TAAATTATAT CACCCATATA AAAATCTATT GAAAATTGGT ATAACAATCT 
    CGTTTACATA GAAAAAAAAG GCAAGAAGCA ATAAAACATT ACATTNGGGG 
    TTCATACATG GGATACAAGA ACCAGCAAGC CCCAAGGAAA GCT

AT1G04860.1

Model type
Protein coding
Short Description
ubiquitin-specific protease 2
Curator Summary
Encodes a ubiquitin-specific protease.
Computational Description
ubiquitin-specific protease 2 (UBP2); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 1 (TAIR:AT2G32780.1); Has 10400 Blast hits to 6714 proteins in 274 species: Archae - 0; Bacteria - 50; Metazoa - 5279; Fungi - 1927; Plants - 1459; Viruses - 5; Other Eukaryotes - 1680 (source: NCBI BLink).
Link
InterPro Scan - TAIR