1. Home
  2. Mutant Lines
  3. 16-1474-1

16-1474-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 762850 [Map]; Strand: c
      • AT4G01760.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -1716; Region: intergenic
      • AT4G01770.1 - [+] show detail - rhamnogalacturonan xylosyltransferase 1
        Distance: -1664; Region: intergenic
    Flanking Genome Sequence: 16-1474-1 - 5-prime edge 
    NTTAAANGGC TANGGGNNGN NGACGGNCAG NCCNNCCCGN NCAGNCNNTA 
    AAAATTTGNG GGNTAAGACT ATACGCANGT ACACTGTGAT AGTNCTTCTT 
    ATGCTTACTT ANAGCATCCA CATTGGTTGG TTTCTAATAT GAGTTTCTTC 
    GAATTGTTTA TTAGTTAATT TTGATAGTTT TGTAGTTTAG AGTTTTTTAT 
    AATTTTTATG GTTCAATAGT GGAATCTTTA AGAGGGTTTC TTAAAAAAAA 
    TAAAAAATGG TTAAGTNCAT AAATTAATAG ATGAAACTCA TGAAATAAAA 
    CTCATTACTC GATTGTAACC CAAAATTGTT AANNTTNGGA CCAAAACCCT 
    CAAATTCATN TNTTAAANCA AAANNGGNTG GGGTTNAAAN CAAAAAACNA 
    AATTNNTTTA TTAAANAAAA NTGGGTAAAN TTNAAAAACA AAACCAAAAA 
    CNTNNTTNNN TTAAGGGANT GGGGTNANNT NAAAACCNNC CNTTTNTTNN 
    NNAAAACCCC CNNNACNNNC NNCNNTTNAA NAAAANGGGG GGGGTNCNNN 
    CCTTNTTNNG GGGNNAANNT TTTTTTNCCN CCCCCCNAAA AAAAANNNNN 
    NNTNNNTTTN NNGNNNAAAA AAANNNNNNN NNANNNNTTN NNAAAAAAAA 
    AATTTTTTTT TTTNNTGGNN GGGGGGGCCT G

AT4G01760.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01910.1); Has 1878 Blast hits to 651 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 1845; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01770.1

Model type
Protein coding
Short Description
rhamnogalacturonan xylosyltransferase 1
Curator Summary
Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the O-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT1 protein might be involved in the synthesis of the α-D-Xyl-(1,3)-α-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.
Computational Description
rhamnogalacturonan xylosyltransferase 1 (RGXT1); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: rhamnogalacturonan xylosyltransferase 2 (TAIR:AT4G01750.1); Has 292 Blast hits to 289 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR