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16-1500-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21603554 [Map]; Strand: w
      • AT3G58400.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-1500-1 - 5-prime edge 
    TCACACTACT TGAACTATGC TCTAGGCAAA TAAATAATCA CCATTTGGTT 
    GGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21603438 [Map]; Strand: w
      • AT3G58400.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 16-1500-1 - 3-prime edge 
    TAGTGTGATA TATTAGATGC ATTTAAATGT TGATTATGTT TTGTGATTTT 
    GTAGAAGTAC AAGAGTGGTT TGACGACTCA ATCAAATGGG GTTGTCCATC 
    CATGTTTCCC CTCAATGAAA TCCATGCCAA AGATAGTGGA TTTCTAGTAA 
    ACGGGGAACT CAAAATTGTT GCCGAGATAG ATATCCTTGA AGTTATTGGA 
    GACGTAGATG TATCAGAAGG TATTTCAACA GTAAAGGAAA CCATACATGT 
    TAATGGCTTT CAACTTCTTC CTTCACAGGT AAAAATACAA TTTAAGAATG 
    TTACAGACTT TGTGTGTAGA TAGATAGTGT TTTATTATAT GGTTCTTTTT 
    TGAGGTGCAT GTCTCCTAAA CTGTCTTTGA ATAGGGATGC GAATTTATAC 
    TTGTATTTTC ATTTGGCAGG CAAAATCTGT TAGCCATATT TTTGAAAGAC 
    ACCCAGAGAT TGCATCTGAA ATCCACCCAA AGAACTCAAG TCTTAGGACT 
    GGTTACATGA GTTTGCTACT CAGTCTGATT GAGACTTTAT CTCAGTCACC 
    TCAAGAACTC TCCAAGGATG ATTTGTGTGA CGTATATATT GCAATTGGAT 
    GTATGAAAAA TGCAGGGTTT AAGTTGGATT GGTTGGAGAA CAAACTTTAT 
    GAGGTGGCNC AAAAGAAGGA GGATGATGAA NCTGGTGANA CTCGGCTACN 
    ANAAATGGAG GAAAAGTNGA AGGACTTGAA NCTCAAGTGT TCAAAAATGG 
    AANCNCTNNT GGAGGA

AT3G58400.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: RESTRICTED TEV MOVEMENT 3 (TAIR:AT3G58350.1); Has 513 Blast hits to 461 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 505; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR