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16-1525-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 381809 [Map]; Strand: w
      • AT2G01840.1 - [+] show detail - transposable element gene
        Distance: -3362; Region: intergenic
      • AT2G01850.1 - [+] show detail - endoxyloglucan transferase A3
        Distance: -3390; Region: intergenic
    Flanking Genome Sequence: 16-1525-1 - 3-prime edge 
    CACAAGGACA AATTGTTTAG GTAAATGCGG ATTTACATTA AAAAAATATA 
    GTTTGATCAG TGAAAATTTA TTCTACTGTT TCAATATTCT TGAATAAACG 
    AATATTAGTG CCACTTGTAA TTTGTCAATA AAATAAAATA TGACNTGAAT 
    TGCCCCTGTC AGTGAAGTCA TATTACCTGT CTCCGTTGGA TTCACCTACT 
    ACTTTACAAC CAACGTCTTT TGTCTTATTG CTTACCAAAC CAAATCATAT 
    TTTACGTGAA AAATACAAAT ATTATCATAT CTTTTCTTCC TAAATTTATA 
    CTAATTGCCG TAAAAACAAA CTATACTACA TATGATCAAC AATAACATGA 
    AACTATATGA AAAATTCATT ACCTTCAAGC TGTCAATAAA AAAAATATCA 
    TCACCTATAA AATGGTATAA AACATTCTTT TACGAGGCAC ACTTATATCA 
    AAAAGATATT TGTTGATGAT TTTTATTTTG TTATCTTACT TAAGGCATTG 
    TTATTTGTCA ATATTTGTTG AGGAACTTTA TAGTTTCAAC AAAGCCGGTT 
    CACTATTTCT AAATTTTAAT GAGGTGTGTA GTTATATAAT AATATTTTTG 
    ACACAAACGA AAAATGATAA AGCTAATAAC CATGTGATTA TATTGATCAA 
    TGTTGTATAG TACTGCATCA TGTGAATAAT TATTGCTTGT ATTTAGCTAA 
    CATGTTCCTG ATCATATATA CCATATCTTT AAATAGTTGT TAGTGTAGGA 
    AAATGAT

AT2G01840.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT2G01850.1

Model type
Protein coding
Short Description
endoxyloglucan transferase A3
Curator Summary
EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves.
Computational Description
endoxyloglucan transferase A3 (EXGT-A3); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: phloem or xylem histogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1); Has 2101 Blast hits to 2091 proteins in 291 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 449; Plants - 1341; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR