1. Home
  2. Mutant Lines
  3. 16-1586-1

16-1586-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9823622 [Map]; Strand: c
      • AT1G28120.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubi...
        Distance: -8078; Region: intergenic
      • AT1G28130.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: -1664; Region: intergenic
    Flanking Genome Sequence: 16-1586-1 - 5-prime edge 
    TAAATTATAT ATATTTCATA TTTTGAAGAA AAGTATTCTG AACTATAGAG 
    TGATAATACT AGTTGAGTAT AATTGGATTT TTTAACCTGC GCAGTTGATA 
    ATCCTTGTAA GAATTGTTTT GGAAATAAAT TTGAAATATT AAAACTATTT 
    CACTCACACA CATGCGAGAG AGAGACTAGT AAAAGTTGGC ATATTTCCTT 
    TCACAAATAC ATAGACCGGT CCACAATGTT TGGGAGAGAT ACAGGACATG 
    CGCAATCTAT AAGACCGACC CNACAACTTT AAAAGACATG CACTCTTTTT 
    GAATATTTTC TAACCCCTAC TATTTCTGTT TTNAAAGTAA TGAATTAN

AT1G28120.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28130.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.
Computational Description
GH3.17; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1405 Blast hits to 1296 proteins in 239 species: Archae - 0; Bacteria - 491; Metazoa - 54; Fungi - 2; Plants - 672; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Link
InterPro Scan - TAIR