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16-1605-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 16935447 [Map]; Strand: w
      • AT1G44830.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 936; Region: intergenic
      • AT1G44835.1 - [+] show detail - YbaK/aminoacyl-tRNA synthetase-associated domain
        Distance: -4350; Region: intergenic
    Flanking Genome Sequence: 16-1605-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GGGGAACTTA TCTAAAGAAA AACAAATCAT ACCTAAAAAA ATAGAGATGG 
    AGTTTCTGAG GAGCAAGGGT AAGAGAGTGA ATCATGGGAC CCCATCTCAC 
    AAAGAACACA CACATAACAA GAAACCAAAA ACAACTCATG TGGCTTTCTG 
    CTCAAATCTA CNTGTTAGAT TTTTCTTCAG ACCAANGTTG GAGTAAAATG 
    GATGTCAATT TTTTTACGAT ATCTAAGCAC AAACGTACAC AGTTTTCCAC 
    GTACGTTAAC TCTTTCTCTT TGGTTTTACC AATTCTAACC AGTCACCACA 
    CAAAACCATT CTGCATCTCT TGTCTCTTCT CTCTTTTTCC TTATCTTTCT 
    TCTAAATAAA TAATATTTAT ACACTTACTC TATTCAACAA TAATTAAGTA 
    AGGATTAATC ATCGCCTTCT ATGACAAGCC TCATGAAACT TGCTTCTTAC 
    TCTTTGACTT TGCAAAACTT TTCACATGAA AAATCTGCTT TCTGTTTAAC 
    TCATTAGCTA ATACTTTTAT ATCCTTAATA AAGAAAAATC ATATATACAG 
    TACTTATATC GCATAGTCAT CTTACCACCA CTTATTTTGT ATCATGTACA 
    CATTTACATC AAACAGTGTT AGTGTTAAAG TCAGTAACCG CCAAATTTTG 
    CATTCATACT ATAAAATCTG AAATGATTGT TTTCAACACT AACTCTTAAC 
    TTTTANGTTT CANAATTTAA TCAA

AT1G44830.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G21910.1); Has 5711 Blast hits to 5172 proteins in 243 species: Archae - 0; Bacteria - 8; Metazoa - 212; Fungi - 26; Plants - 5113; Viruses - 0; Other Eukaryotes - 352 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G44835.1

Model type
Protein coding
Short Description
YbaK/aminoacyl-tRNA synthetase-associated domain
Computational Description
YbaK/aminoacyl-tRNA synthetase-associated domain; CONTAINS InterPro DOMAIN/s: YbaK/aminoacyl-tRNA synthetase-associated domain (InterPro:IPR007214); Has 1390 Blast hits to 1389 proteins in 506 species: Archae - 0; Bacteria - 937; Metazoa - 52; Fungi - 8; Plants - 40; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).
Link
InterPro Scan - TAIR