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16-1709-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8408239 [Map]; Strand: c
      • AT1G23780.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-1709-1 - 3-prime edge 
    CGTCTGATTA CTCTCCGATT GAGGAGCTAA GGTTTCAAAA TCTCTCAATT 
    TCCAATTCGA AGATTCGCCA GCTTCGAGAG AGTAGTAAAT TAGGTCACCG 
    GATATTAAAC CAAGAGATCG GAGCGTGTCC TCTGCAGAAG GAGTGATGAG 
    CTCGTCTTTA CGATTAAGCG ATAGATGAAC GGAGGCAGGC GCCGTGGGGT 
    TGATCCGTCG CCGGAGATCA TGGAGAGTGT CTGCGTCGGC CAATTCAAGT 
    TTTAGGGTTT CTCTCGTCTC GTGATGTCTC AATCGTAGCT TCATTGTCGG 
    GATACTACGA TCTTCTTCTT CGCGACACAA AGTACAGTCA TGAAATCTGT 
    TGCGTACACA CATACAGATA AAAAGGCTGA GGCGGTTACC ANCCCNGGCN 
    CNNANCACGC CNNCCCCTAN AACTTCTTAT AGTATATGGG GTTTTCGTGG 
    ATAAAAGATT TGAATGTGTC AAAGGAAGAT TGATTAGAGT GAGTGAGAAC 
    CTATGAATTA NACATCTCAT AAAACATGAA GTTAATAGAC CAAATGGTCC 
    GAGTTTCTGT TAAAAAGGTT ATCAATTTGT ACAATCACTA ACCAAATCTG 
    GCTCTANCAT TTGCAACACA ATTAGTAACA TANCCTTCAA TAAGCAACAT 
    TGATNTTACT ACCTCNAACT AATTNGNNNT TTGNTATGGN ATGTATGCTT 
    ACGCTTTNGA TTTTAAAANA TAAAAAAATC CTANAATCCN AAAATCCNAA 
    AAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8408123 [Map]; Strand: c
      • AT1G23780.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-1709-1 - 5-prime edge 
    ATCAGACGAT TGTTCATGAT TCGATCGGAT TCGCAGAGGT TGATGTTGTC 
    CCCGATCAAG CGAAATCTAA TTCTAATTCC GCCGTAGAAG ATCCAGAGGG 
    GAAAAGTTCG GGTATGGATG GTCCAGAGCC GATGGATGTT GAGCAGCTTG 
    ACATGGAGCT CGCTGCCGCT GGAAGCAAAA GGCTAAGTGA ACCATTCTTC 
    TTGAAAAATA TATTGCTTGA GAAATCTGGT GATACTAGTG AGTTGACTAC 
    TTTGGCTTTG TCAGTACATG CTGTTATGTT AGAATCTGGA TTCGTGCTGT 
    TGAATCATGG CTCTGATAAG TTTAACTTTT CAAAGGAGTT ACTTACGGTA 
    TCTCTAAGGT ATACTCTACC TGAGCTAATT AAGTCTAAGG ATACAAATAC 
    AATCGAGTCA GTTACAGTGA AGTTTCAGAA CTTAGGCCCT GTGGTTGTGG 
    TTTACGGAAC TGTAGGTGGG TCTAGTGGGC GAGTGCATAT GAATCTTGAT 
    AAGCGTAGGT TTGTGCCCGT TATCGATTTG GTTATGGATA CTTCTAAATC 
    TGATGAANAA GGCTCTTCNA GTATCTACCG TGAAGTGTTC ATGTTCTGGA 
    GGATGGTAAA AGATCGTCTT GTTATCCCGT TGNTGATTGG TATTTGCNAT 
    AAANCTGGGT TGGAACCTCC TCCNNGTTTG ATGCNCCTAC CNNCNNANCT 
    AAACTGANAT ACTANANTNG CTTNCTGGNG NA

AT1G23780.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23770.1); Has 310 Blast hits to 310 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR