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16-1923-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9311309 [Map]; Strand: c
      • AT1G26860.1 - [+] show detail - transposable element gene
        Distance: -5509; Region: intergenic
      • AT1G26870.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: -1547; Region: intergenic
    Flanking Genome Sequence: 16-1923-1 - 5-prime edge 
    GAAATCAGTA TATTGAGGTT AAGTTTTAAT TGAATCTAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9311425 [Map]; Strand: c
      • AT1G26860.1 - [+] show detail - transposable element gene
        Distance: -5625; Region: intergenic
      • AT1G26870.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: -1431; Region: intergenic
    Flanking Genome Sequence: 16-1923-1 - 3-prime edge 
    CTGATTTCAA GTAATTTGGT CTCACGAACA TAGAGATATC CCCTCCATTA 
    CCCCCCAAAT TGGCTGCCCA AGCGGCAGTA TATCACATAT GGAGACAGCG 
    GAATCATCTC CTTCACAATG GCATCTCAAT TCCGCCTCCA ATTGTTTTCA 
    AGAACATCAA TAGCGAAGTG AGAAACACCA TTACTGCTAG AACGCCCCCG 
    TAAAGTCTTT CGTGCCTTAA TTGCTCTTTG GATC

AT1G26860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1); similar to hypothetical protein 27.t00122 [Brassica oleracea] (GB:ABD65056.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)
Link
InterPro Scan - TAIR

AT1G26870.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Computational Description
FEZ (FEZ); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 2973 Blast hits to 2966 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2971; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR