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16-1939-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23402603 [Map]; Strand: w
      • AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-1939-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TGAAAGNGNT GTATCTTTTA TTTCCGTAAG TGTTATATCT 
    TTTCCCGCCT TGCTTAAAGC CTGCGCCAAA CTTAGAGATA TCCAGAAGTG 
    GCTTCTGAGC TTCATTCTCT CCTCGTTAAA CTTGGCTACC ATTCAACCTG 
    GTTTTATCGT CAATGCGTTG GTTTCCATGT ATGCTAAGAA CGATGACCTT 
    AGCGCTGCAA GGCGTCTGTT TGACGGATTC CAAGANAAAG GAGATGCCTG 
    TTCTCTGGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13860731 [Map]; Strand: w
      • AT4G27820.1 - [+] show detail - beta glucosidase 9
        Distance: -160; Region: promoter
    Flanking Genome Sequence: 16-1939-1 - 3-prime edge 
    GAGTTCAACG TGTTACGGTT CATCAACTCG CAAGGATATA ACACTTACGG 
    AAATAAAAGA TATTTTCTAT AGCATATTTG TGGCGTATCA CGAGTGGGAG 
    AAGGAAAGGA AAAGCTCGAT GCTTCTCTTT TTCAATGGTC CAATGATTTA 
    TTCACNTTAC AATTATTTAT TCACTTCAAC TTCTCAGACT ATAGGACGTC 
    CTAAAAATAA AAATGAAACC TTTCTCTAGA GTGTTCATTA TTTTGGTCAT 
    CGTTTTGTTA ACAAGCTACA TAGATGCCTT TACCAGAAAC GATTTTCCAG 
    AGGATTTTCT CTTCGGAGCT GCCACTTCTG CTTATCAGGT TCTGTGTTCT 
    TCATTTCTTT TGTCTAAAAA AAGATAGTTT TCGTGATGTT GGAAATTTCG 
    TTGAAATAGT GGGAAGGAGC TGTTGATGAA GATGGAAGAA CTCCTAGCGT 
    CTGGGACACG ACCTCTCACT GTTGTAAGCT

AT3G63370.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 86 (OTP86); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 48148 Blast hits to 13528 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 44; Fungi - 62; Plants - 47536; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27820.1

Model type
Protein coding
Short Description
beta glucosidase 9
Computational Description
beta glucosidase 9 (BGLU9); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 11131 Blast hits to 10798 proteins in 1457 species: Archae - 142; Bacteria - 7630; Metazoa - 718; Fungi - 199; Plants - 1452; Viruses - 0; Other Eukaryotes - 990 (source: NCBI BLink).
Link
InterPro Scan - TAIR