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16-2121-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2557686 [Map]; Strand: w
      • AT1G08150.1 - [+] show detail - Cation/hydrogen exchanger family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-2121-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTN CATACAGAAA ATAACACAGC TCAACAATTC 
    CTTTGTTGCT GAGGATGAGT GCCATAACGA AAGAGTCGGT CAGAGGCATT 
    TTGGCTAGCA ATGCAGAAAT CATTGAGAAG ATAATCTTGG CGACAAAGAC 
    AACGATGATG ATGGTCAAGG CTTCATACAA CTGACCGTCA AAATGCCTTA 
    GTTGACCGAT CTGGTTAGCT AACCAAGGTC CATCGATTTG CAGCATTGAG 
    AAGAACAAGA AAAGTGGCAA AAGGATTCCA GTGTTAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2557645 [Map]; Strand: w
      • AT1G08150.1 - [+] show detail - Cation/hydrogen exchanger family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 16-2121-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAACTT 
    AATTCAAGAC AATTCAACTC TCCAACACTT AATGTTTTTT TTTTTNTTTN 
    NGNNTNANAA AATNATTTGG NGGGGTANCG GGTNCTTCNN GNNAAGCCCT 
    TCNCAATTNN GGCANCNANN ATTTTAGGGA NCNNTACAAN NTCNCCAGGG 
    TNGANCCNTN NCCTNTNNNA TNCGNNAAAN CAATNCNTTA NTTNCCAAAA 
    NCGGANTNTA ANGANCTNGA ANCTCCCANC CNGGNCCGNN NNCCNCCCGN 
    GGCCNTANAA ANNAA

AT1G08150.1

Model type
Protein coding
Short Description
Cation/hydrogen exchanger family protein
Curator Summary
member of Putative Na+/H+ antiporter family
Computational Description
ATCHX5; FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 6A (TAIR:AT1G08140.1); Has 2700 Blast hits to 2678 proteins in 819 species: Archae - 128; Bacteria - 1881; Metazoa - 0; Fungi - 113; Plants - 529; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR