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16-2209-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7427267 [Map]; Strand: c
      • AT1G21210.1 - [+] show detail - wall associated kinase 4
        Distance: 226; Region: intergenic
      • AT1G21220.1 - [+] show detail - transposable element gene
        Distance: 845; Region: intergenic
    Flanking Genome Sequence: 16-2209-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTTTTACATG TTTTTTGAGG AGAATCAAGG 
    AGATAATAAA TCAAACTAAA AGAAGAGTTA TAAAACACAA CGATTGATGA 
    TCTGGCGAAA CAAGAATGTC TCAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7427280 [Map]; Strand: c
      • AT1G21210.1 - [+] show detail - wall associated kinase 4
        Distance: 239; Region: intergenic
      • AT1G21220.1 - [+] show detail - transposable element gene
        Distance: 832; Region: intergenic
    Flanking Genome Sequence: 16-2209-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATACC 
    AAACATTGCA TTCAGGAAAT GTATGGATTG GTGGTTTAAG ATCATCAATC 
    ATTGTGTATC TGTGTGTGTA TATAAATCCC TTTGGTATTT GAAGATTTAG 
    AATT

AT1G21210.1

Model type
Protein coding
Short Description
wall associated kinase 4
Curator Summary
cell wall-associated ser/thr kinase involved in cell elongation and lateral root development
Computational Description
wall associated kinase 4 (WAK4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation, unidimensional cell growth, lateral root development; LOCATED IN: plasma membrane; EXPRESSED IN: root, trichome; CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: wall-associated kinase 2 (TAIR:AT1G21270.1); Has 129683 Blast hits to 121711 proteins in 4745 species: Archae - 127; Bacteria - 14044; Metazoa - 54379; Fungi - 9626; Plants - 33474; Viruses - 427; Other Eukaryotes - 17606 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21220.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.9e-26 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR