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Mutant Lines
16-2277-1

16-2277-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 17903543 [Map]; Strand: c
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: intron2 (CDS)
  - AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (3UTR)
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: intron2 (CDS)
Flanking Genome Sequence: 16-2277-1 - 5-prime edge
```
ATAATTAGGT NATTNTCAAA AGGAAGTGTA GAATCCATGA TAAACGAATG 
CATAGTGAAT AATCGATGAT ATCTGGAAGA AAACACTCTA TTGATATCAC 
AATCACTCAA GGTAAAGCTC GTGCTAGAAA TTGGTGCACA AGCTGAAAAC 
AGCTTACAGA GAGAGCCTGA TGAAGGAAAA AACTAGAGAG AGATATAAAA 
GCTAGGAGCT TGCAGTTACC TCCGAAAAGC CAAACTTCTC ATGGAATTTC 
TTTGTGTTAC AGTCCAGCAT TTCTCTAAGG CTGCAGTCAA TGTTGTTCTT 
TTTGACAAGT TTAAACCTCG ATTCGACCTT CTTCTTCAAT CCATGGTGAA 
AGAATT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 17903659 [Map]; Strand: c
- AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: 0; Region: intron2 (CDS)
- AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: 0; Region: intron2 (CDS)
- AT4G38170.1 - [+] show detail - FAR1-related sequence 9
  Distance: -899; Region: promoter

CTAATTATGA TAGAACCACC ACCATGGCCC GATCAAGTGC ATATCCATAG 
AGTGGTTCCT GTGTTTTCAG GTATTCAACT GCAATCAAAA TGGGATGTAT 
ATGTTGTTGG ATAAGTCAGT GTCATTATTG GCTTGTGATT ATTGCAGCAA 
CCGACAAGCA AAAGAAGTGT CTGCTTAGCC TAACTGCAGA ACAGAATATG 
CAGCAATGCA GTCTAGCTGC TTGTCGGAAG TATGGGTGGG TAAAAAGCCC 
CTAGTCATTC CACAAATATG GAGGCCCCTA GTCAAAGGTC ACATTTGATG 
ACAAAGAGAT GGTTGATCGT TCTCTGCCTA TATAGTATGT ACCTGTCATA 
TAAAAATGAG ACCCCCTCTG CTCTCTCTTT TGGATGAGAT CAACCGTATT 
TTAAACCGGC CAAACTTGAA AGTTTTTTTT TGCTTCAAAT GCTCTTTCAA 
GTANAGTCCC TTTTGTTATT CACGTTTTGT AGCTATTCTA TTCTCTCTCC 
TTGGACTGGT GTTTTTGTTC TTCGGTTTTT CCGATCAAAG TTGAATCAAG 
AAGAAGTTCG ATATGTCCGT CTTCGCTGTT TCTTGTGGTT GCTTGTTGGG 
CTTCTGTGCC TTTTTGATTT TTTCTATTTT GGGCCTGTGT GCCATGTTTT 
CGGCATTTCT GCTTTGTTGG GCCTACGTGC CTTTTCNANC CTTGTANTTT 
NTTTGTTAAG CACTCAATAA TTGNTTGNTG ACGGACCAAA AAACTNAAAT 
AGGCCN

AT4G38160.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.2

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.3

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link: InterPro Scan - TAIR

AT4G38170.1

Model type: Protein coding
Short Description: FAR1-related sequence 9
Computational Description: FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1073 Blast hits to 1051 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1067; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR