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16-2394-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
vascular leaf (PO:0009025)
  • abnormal (PATO:0000460)
    (Leaves::abnormal shape)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5737148 [Map]; Strand: w
      • AT3G16830.1 - [+] show detail - TOPLESS-related 2
        Distance: 0; Region: exon24 (CDS)
    Flanking Genome Sequence: 16-2394-1 - 3-prime edge 
    AGGTTGAGGC ATGTAGGCTG ATGGGGCAAT GCGGCATCTG AGTCTCAAGG 
    ATTCAGCATC AAAGACTGCA ATGTTTCCAT CAGCGAATGA CGCGTAAACC 
    AGTTGGCTGT TGCATGAGTA AGATGCAGAG GTTATGGGCG AAGAGAGAGC 
    NTTCTTGGGG CACCCACTGC ACAAGGAATG AGAATTTAAG GTTTCTTATA 
    ATCATTCAAG ATCTCCAAGT AAATACAAAG ATTTTTTACG ATACCTTATG 
    AATGCATTCC ATCTTCGAAG CATCGTAAAT GGCGAGCTGT GTCTCATGTG 
    AAACCAATAA CTGGATTTGG TCGTTGTGGA ATTGGACTCG TGTGTCGCCT 
    ACTGGTGCTT TGCCAGGTGG TAGCTGTATC GCTGAAGATT TCTTTTTCTC 
    CCACGAGTCA GCGGTCCAGA AGAAGAGCTG TAATAAAGAG AGTTAACGAG 
    TCTGTTAAGT TACAAGCCAA CATGGACACG AAAAGCTCCA ATAGCATCTA 
    AGAAACATGA ATTTTGTCTT ACCTGAGCAT CGGCACCAGA AGAGACAAGA 
    ATATTGAGCG CGGTAGAGAA TGCTAGACCA GTTATGTGCT TCTGGTGACC 
    TTTCAACTTT GTTTTCACCT ATAGATTAAA AGAGATTACA TTACAAATTC 
    ATTTAAGAGA TGAATCAGCA GTTACACCAG TAAAAACCAG TAGACCGCAG 
    AATAGAACAA ATGTACTATA CCTCATCTAC CCTGACGTTG TAAATATGTA 
    TACTCGAGTC CT

AT3G16830.1

Model type
Protein coding
Short Description
TOPLESS-related 2
Computational Description
TOPLESS-related 2 (TPR2); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 3 (TAIR:AT5G27030.1); Has 13436 Blast hits to 8919 proteins in 512 species: Archae - 16; Bacteria - 3246; Metazoa - 4126; Fungi - 2976; Plants - 1389; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).
Link
InterPro Scan - TAIR