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Mutant Lines
16-2397-1

16-2397-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 23402596 [Map]; Strand: w
- AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

CGTGGAATAC CATGATTGGA GCTTATGTTT CGAATGGTGA ACCTGCTTCC 
GCTCTTGCTC TCTACTGGAA TATGCGTGTG GAGGGCGTTC CTCTCGGTCT 
TTCCTCTTTT CCCGCCTTGC TTAAAGCCTG CGCCAAACTT AGAGATATCC 
GAAGTGGCTC TGAGCTTCAT TCTCTCCTCG TTAAACTTGG CTACCATTCA 
ACTGGTTTTA TCGTCAATGC GTTGGTTTCC ATGTATGCTA AGAACGATGA 
CCTTAGCGCT GCAAGGCGTC TGTTTGACGG ATTCCAAGAG AAAGGAGATG 
CTGTTCTCTG GAATT

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 23402480 [Map]; Strand: w
  - AT3G63360.1 - [+] show detail - defensin-related
    Distance: -889; Region: promoter
  - AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 16-2397-1 - 3-prime edge
```
ATTCCACGCA AAGGCAGTTC TGTCAGGCAT TTCGTCAAAC ACTTTCTCTG 
CGTCATCCAG AGACCCGCAC TTACCGTACA TAAAAACAAG CT
```

AT3G63360.1

Model type: Protein coding
Short Description: defensin-related
Curator Summary: Encodes a defensin-like (DEFL) family protein.
Computational Description: defensin-related; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63370.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a chloroplast RNA editing factor.
Computational Description: ORGANELLE TRANSCRIPT PROCESSING 86 (OTP86); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 48148 Blast hits to 13528 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 44; Fungi - 62; Plants - 47536; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).
Link: InterPro Scan - TAIR