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16-2414-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26428056 [Map]; Strand: w
      • AT5G66100.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 16-2414-1 - 5-prime edge 
    CCTCTTTGGA TGCTTCCAAA CCTTTTCCTG ATGGATCATC GTCATCAATA 
    CCGCCTCCCC AGGTCGTTTC TTTTTGCGCT CCGATTATGT CATTACAGAA 
    TATTAGGGAT TCACCAGTAT CTACCTATTA TAGGCTTGTG GTTTCAAGTT 
    TCATTTCTCA AGCTCCTTCT TTTGCATGTT TCGAATCCAA AGAGGATAAT 
    TTAGTCTAGT CGTCAATATG CTTGTTTGAT TGCCTATAGT AGATACATAT 
    ATCCGCTTTT GCTCATTATC CATCCATATA TATTGCAGGC TACTTCCAAC 
    ACCAGCACCA ATGCCAATGC AGGCTCGACT CTTCTCATTC GCATTCTTTG 
    TCAAAGGCCT CAAAGTTGGA CTCGTTTGAG AGTTTAATAA TCTAATGTGT 
    TAGTATGTAT CTTCTAACAA TCATATAAGA TAATAGCAAC ACTTGAGAAT 
    CCAAAAACAC AAAAGGTCAG TTCGATGTAT ATAGTCAATC ATCTAAAAAG 
    CAATATAGCT TCTAAATGGT TCCCTACAGT ATATAGTTTC GTTTGTTTAT 
    TCAACAAAGA TGATCTGGAA CCAGCTCATT ATGGGTTTTC TGACCCTCCC 
    ACACTTTATT CTTATATACT TTTAAATTAA TTAGGATCAT ACAATAAATA 
    ATCAAACACA CATATTCTTC NAAGACAAGA GTTAGTTGAT CGGTTCAAAT 
    TANTTAGN

AT5G66100.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Computational Description
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR