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16-2507-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8236575 [Map]; Strand: w
      • AT3G23125.1 - [+] show detail - MIR173; miRNA
        Distance: 329; Region: intergenic
      • AT3G23130.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -5727; Region: intergenic
    Flanking Genome Sequence: 16-2507-1 - 3-prime edge 
    CCCTCACGGT CCTCACCTCC CAATTTTATT CCATGGACAA ATTAGCATAC 
    AAAAACAGTT TCTCATGTCC TTGATTTATC AATTTAACAA CCAAATCAGC 
    AAACTCATCT ATCGATATAA ATGTCATTCG TAAATCAGTA ATTTTTATCA 
    CCGAATTTCC AAATTGAAAT ACATTATTCA GATTTTATAA CCAGTCAAGA 
    TTTCATGGAT CTGTTATACA ACCAAATCCA TAAAACATTA TCGTTACCCT 
    AATGAGATAC TTTCCAGTGA AACATAATCA AATCATCAAC TCAAAAAACG 
    CATCAGATCT ATCAAACACA TAGATTTACG AAGATCTCTA ACATTAAATC 
    ATCAGAGAGA TAAGTTTAGG GAGCAAGCTC TTTCGCTTAC ACAGAGAATC 
    ACAGAGGAAA GAGACTTTAA GAAAACTACA ACTTTTTTGA CCACTGTGAT 
    TTCTCTCTGC AAGCGAAAGT ACTTAGTCAC CAACACGGTA GATATGGTTT 
    TGCTATGATA TATGGGATTT GGGTTTATTT GTGAGCGGAA GATCTAAAGA 
    AGAAGAAAGT ATTTATATAG GGGAGAGGAA AATAGGGTAT TGGGCTGAGA 
    TTACGATGAG ACCGCCGCTT TAAGTTTTGT TGACTTTTTA ATGCTTTATT 
    CAGATTCGAA TCTGACGGTC TCCAAATATT TTTCCTTTCT CAGCTATAAT 
    TACAGGATTT TATTCCTTAT CATTCTTATA GNACTTGCCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8236691 [Map]; Strand: w
      • AT3G23125.1 - [+] show detail - MIR173; miRNA
        Distance: 445; Region: intergenic
      • AT3G23130.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -5611; Region: intergenic
    Flanking Genome Sequence: 16-2507-1 - 5-prime edge 
    CGTGAGGGTA GTCAGGAAAC CTTAATATTG AAGTTGATGT TGAACCAACA 
    AATCTGCCCA AAAATGATAA AAGTTGATGC CGAGCCCACA AATTTTGATG 
    ACAATCGATA AGCCCAAGCC CAAAAGGCAT CTGTACCTGA GCCCATTATT 
    CTTTCATTAC TAGCAAAAAG GATGCATTAG AGACCCCGGT GTAGTAAATT 
    GACCTCACAA TTCACTATTG TATTGTATAC GTACATTTCA AGCGTAATTA 
    AACCCTCATA TTTTTATACG CTTTAAATAT AATTGGCCTT TAATTAGCTC 
    AAATAAACTA GATGTCGTAC GTGATCACGG TGGATGAAAT CAATGGTATT 
    ATGAAAAGAC TGTACATGAT TTCAAATATT TTAATGTGGT CGTAAAAATT 
    GTTGTTTATA GTGGAAATTG AAGACAACAA CGTTACTGAA ATACATACAG 
    ATTGAAATTT CGATCATTTA CTTGCTAAGT GTTACCGTGG AGGCGTGGCG 
    TGGACGTAAG GTACCATAAT GGTTTGTGTT ACAGTCACGC CACTACACTC 
    GAATT

AT3G23125.1

Model type
miRNA
Short Description
MIR173; miRNA
Curator Summary
Encodes a microRNA that targets the TAS1 and TAS2 families of tasiRNA-generating transcripts. Cleavage of TAS1 and TAS2 transcripts by miR173 initiates processing of these transcripts in a 21-nucleotide register. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCGCUUGCAGAGAGAAAUCAC
Link
InterPro Scan - TAIR

AT3G23130.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Curator Summary
Flower-specific gene controlling the boundary of the stamen and carpel whorls. Similar to zinc finger transcription factors.
Computational Description
SUPERMAN (SUP); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: flower development, negative regulation of transcription, specification of floral organ identity; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 11 (TAIR:AT2G42410.1); Has 1049 Blast hits to 1049 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0; Plants - 1011; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR