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16-2508-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3063405 [Map]; Strand: w
      • AT5G09850.1 - [+] show detail - Transcription elongation factor (TFIIS) family protein
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: 16-2508-1 - 5-prime edge 
    GTAGTAACAA CAAAATAGAA AACAAGTGTA CCCACCAACT TAATTCCAAA 
    TTCTTGAAAC ATTTTTAGAA TT

AT5G09850.1

Model type
Protein coding
Short Description
Transcription elongation factor (TFIIS) family protein
Computational Description
Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT5G05140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR