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16-2540-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1380232 [Map]; Strand: w
      • AT1G04880.1 - [+] show detail - HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
        Distance: -1047; Region: intergenic
      • AT1G04890.1 - [+] show detail - Protein of unknown function, DUF593
        Distance: 150; Region: intergenic
    Flanking Genome Sequence: 16-2540-1 - 5-prime edge 
    ATATTATACG CTGGATATCT TTTACCAAGA ACATGTGTAA CAGTATAATT 
    TCAAAAAGAG GGAATTTAAT ATATGATGAT ATCAATTAGT TTATGATACA 
    ACGAATACTT ATTTTAGACA TTAAAAGTTT GACCTTGGCA CATATTTCGT 
    GATATTTTTT ACTAGTTTAG CAAATTCAAC CATATCGTTT ATAGAGGTTA 
    AAAATAAGAA AACACCAAAT CGGAAATAAA AGGTTATATA CTTAACAATA 
    AAGCGAAACG ACATGATATT TTATGATTTT CTCCACATTA TTTTTTATCT 
    GTATCTTATA AACTAATTAG TATTGGAGAA TATCATCATA TACACAAGAA 
    TGATTCAATC ATTCAAATCC TAGAAGAAGA TTTCAATTCT CAACAATCTG 
    TAAAATACAT TTTTACATAC ATTATCACCG CTTACATACA TTTAGAACAA 
    AATTTAATCC ATTGAACAAC TGATATACTA CAATAACGGT TATATTTTAT 
    ATCAGTCAGT TGAAAAGCT

AT1G04880.1

Model type
Protein coding
Short Description
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Computational Description
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G76110.1); Has 3445 Blast hits to 3110 proteins in 301 species: Archae - 0; Bacteria - 5; Metazoa - 2269; Fungi - 308; Plants - 431; Viruses - 3; Other Eukaryotes - 429 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04890.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF593
Computational Description
CONTAINS InterPro DOMAIN/s: Intermediate filament protein, conserved site (InterPro:IPR018039), Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT4G13630.2); Has 7701 Blast hits to 5611 proteins in 507 species: Archae - 60; Bacteria - 425; Metazoa - 4500; Fungi - 427; Plants - 586; Viruses - 7; Other Eukaryotes - 1696 (source: NCBI BLink).
Link
InterPro Scan - TAIR