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16-2663-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3590847 [Map]; Strand: w
      • AT1G10760.1 - [+] show detail - Pyruvate phosphate dikinase, PEP/pyruvate binding domain
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 16-2663-1 - 5-prime edge
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG TTCTCTTGTA TCTTTTTTTT ATTGGTCGAC
    ATGTTTTTTT TTTTTTTNNT TNGGGGNNNA AAANCNAAAA NNGGAAAAAA
    ANTTTTGGGT NANTTTTTNN NTTTNGGGGG GNAAAAANNC CNAANCCCCC
    TNGGNAAAAN NNGGAAANNN NNNCCNAANA AAACCNNNNT GGGGGGTTTN
    GGGGGGGGGT TTTTTNNAAA AANNGTTANN NNNNNGGGGA AAAAAAAANG
    GNNNNTAAAA NNAAAANCNA NGGNAAATTT NGNNAAANGG NNNGGGGGGT
    NAANNGGGGC CAAANTTTTT AAANCNAAAA AAAAANAANT TNNANTTTTT
    TAAAANNCTT AAAAAANTNN AAAAAANAAN NTNGGGNAAA AATTTNTNTT
    TTNNGNNAAA AAAAAAAAAA ANNAANGNCT TTNNNAANNN TTNAAACNTT
    NANTNCCCCC CNAATTTTAA AAAAAAAANN TAAAAAANCC TTTTAAAGGG
    GNANTTTTTT TNCCNAATTT NNNANNNNCC NAATTTTTTT TNNAAAAAAA
    TTTTTTTNNT NGGGNAAAAA AANNGGGGGG GGGNANANCC NGGNNCCCCC
    A
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3562003 [Map]; Strand: c
      • AT1G10717.1 - [+] show detail - LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: ...
        Distance: -177; Region: promoter
      • AT1G10720.1 - [+] show detail - BSD domain-containing protein
        Distance: -949; Region: promoter
    Flanking Genome Sequence: 16-2663-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTT 
    GAAATCCTGA AATAAAAGGT TATATCTTGT TTTTTTCCTT GAAAGAAACT
    TAAGGTGTAT CCTAATTTAA TTTTCTCTAC TTGTTTATAT ATTCTAAAAG
    TTTTTGTATT TACATAATTC CACAACAACT CGAGAAGACA AATAAAACTC
    ACAACACAAT TGTTTGAGAC ACTCAAACCA TGAAATCATC ACATACAACT
    TTAATCTGTA TAATCATGCT CTCCCTCTTT GCTCTGCATG AATGTACGTA
    CATAATTTTG TTTCTTCTCG TATCAATTAC CTTTTTTCTC TTTTTCTTTC
    CATTGTTAAA TTTGGTTTTG TGTGTATGTT CAAATCAATG TGTAGGTGAG
    AAGATGGAGG TGAAAGAGAT AGGGAGATCG AGCAAAATCA TTTTACCAGC
    GTGTATGCAT GAGACTTGCT CCGGTGGTTT CTCACTGAAA AATGATTGTT
    GGTGCTGCTT GCGACTTAAA ACTAAACAAG CTCGTTGTTG GAAAGAAAAA
    GAATTTCCCA ACGCTAAGGA GCTTTGTTTC GCCAATTGTC CCCCTCTTGA
    ATAATTTTTA TGGATTCTGT CATTTCNAAG CANATTTTTT TTAAAAACGT
    NGATAAAATC TAAATATGTN TGTNGCATAT TCNATTTAAG GTTTTTTATG
    ACNTTTATTN NNATTTTANN GGATTCCTTT ACNTTAANGN NACNAAATTC
    TTATTTNNNT AATTNAA

AT1G10717.1

Model type
Protein coding
Curator Summary
Encodes a Maternally expressed gene (MEG) family protein
Computational Description
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Maternally expressed gene (MEG) family protein (TAIR:AT1G27135.1); Has 38 Blast hits to 38 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10720.1

Model type
Protein coding
Short Description
BSD domain-containing protein
Computational Description
BSD domain-containing protein; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1); Has 1569 Blast hits to 1461 proteins in 180 species: Archae - 0; Bacteria - 14; Metazoa - 740; Fungi - 179; Plants - 264; Viruses - 21; Other Eukaryotes - 351 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10760.1

Model type
Protein coding
Short Description
Pyruvate phosphate dikinase, PEP/pyruvate binding domain
Curator Summary
Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.
Computational Description
STARCH EXCESS 1 (SEX1); FUNCTIONS IN: protein binding, alpha-glucan, water dikinase activity; INVOLVED IN: cold acclimation, response to symbiotic fungus, response to trehalose stimulus, circadian rhythm, starch catabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192); BEST Arabidopsis thaliana protein match is: phosphoglucan, water dikinase (TAIR:AT4G24450.1); Has 2623 Blast hits to 2596 proteins in 1116 species: Archae - 196; Bacteria - 1989; Metazoa - 24; Fungi - 8; Plants - 221; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Link
InterPro Scan - TAIR