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16-2677-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6949118 [Map]; Strand: c
      • AT1G20040.1 - [+] show detail - pre-tRNA
        Distance: -175; Region: promoter
      • AT1G20050.1 - [+] show detail - C-8,7 sterol isomerase
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-2677-1 - 3-prime edge 
    AGTAGTAAGC ACATCATCAT CACTCAGATC TAGTAGTTCC ACAAACTCAC 
    ATTGGGTCGT TGACCAGAAA AACACACAGA GAAAGGAGAA AAACATGGAG 
    GAGTTGGCGC ATCCGTACAG TTCCGAGAGA TCTGAACCTA CCCGGATACA 
    GTACCAATCT CAATGTCAAT GTCCTCCATC GTCTCTATCT ACCTCGGTTC 
    TTCCCTCCTT GTTGTCTCCC TCGTCTGGCT TCTCTTCGGT ATTTCCCACT 
    CCCCCTCCCT CATCTCTCTC GAAACGTTTT AAGTTGAAAT TGAACTGATG 
    GAAGTAACAA AAATTGATCT ATTTACTCTG CAAAGTTGAC CCAATTCTGA 
    GAATTTTGCT GATTGGTTGG TTTCAGGGAG GAAGAAAGCT AAACTTGATA 
    AGTTGCTTAT GTGTTGGTGG ACATTCACTG GTCTCACTCA TGTTATTCTC 
    GAGGGCTATT TCGTTTTCTC CCCTGAGTTT TTCAAGGACA ACACTTCTGC 
    TTATCTTGCT GAAGTTTGTA AGTTCTTTTA TCTTCTTCTT AGTGTTGTCA 
    TTGTTGTTCA ATTAGACCAA TTCGTAAGAA GCTAAAGTTT GTTTCTTTCA 
    CAGGGAAAGA ATATAGCAAA GGTGATTCGA GATACGTAGG TAGAGATTCT 
    GCAGTTGTAT CTGTTGAAGG GATCACTGCT GTTATCGNTG GCCCAGCTTC 
    TCTCCTAGCT ATGTAAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6949002 [Map]; Strand: c
      • AT1G20040.1 - [+] show detail - pre-tRNA
        Distance: -59; Region: promoter
      • AT1G20050.1 - [+] show detail - C-8,7 sterol isomerase
        Distance: -41; Region: promoter
    Flanking Genome Sequence: 16-2677-1 - 5-prime edge 
    TTACTACTAA TCTCCTCGAT CCCGGCGATT CATTCAATCA AGTGTCTTTT 
    GTTTGGTAAT AAAATAATTG GTGACACTAA ATCATCCGAT TCTTCTATAT 
    GATGAATTTA TGAGATCTTT AATCAGGAAC GTCAGGATGG CCGAGTGGTC 
    TAAGGCGCCA GACTCAAGTT CTGGTCCTCG TAAGAGGGCG TGGGTTCAAA 
    CCCCACTTCT GACATTATCT TTTTTTTTGG AAAATTTGTC CACACCAAGG 
    TCAGGAATAT ATTCATGTTG CTTTTCTATA TATTAGTTAA ATTTANATTA 
    TTGGTCCATC TGTTCTCCAC TAATAAATTA TTCTGACTCT CAAGTTAATA 
    ATTCGTTTGT TATTTTGTTT ACTTATTTAT TTTAATTATA TTGTTAACAT 
    TTAATTCTAA TTACTTACCT TAACATTAAT AATAATTAAA TTTGTTATAT 
    TTAAAGCGTA AATGAAAATG TTTTTTTTAA TTTTGTCATC ANATATTATC 
    AAAATGGTTA TTAAAAACAC CAAAAAAAAA TATTTATCGA ATTANTTAAA 
    TCAAATTAAT NCCCTCGAGG TAAATNGTTT TAAACNTNCG GGTTTTGGCC 
    TANTTNGTAT TAAAACTNGT CATNATAGCC TGGNGTTCAA CCTCGNGGGG 
    GNGNTATAAN ATNAAAAAAC NTGGGNNNCN TTTGCAAAAA GAAAA

AT1G20040.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Leu (anticodon: CAA)
Link
InterPro Scan - TAIR

AT1G20050.1

Model type
Protein coding
Short Description
C-8,7 sterol isomerase
Curator Summary
C-8 sterol isomerase
Computational Description
HYDRA1 (HYD1); FUNCTIONS IN: C-8 sterol isomerase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Emopamil-binding (InterPro:IPR007905); Has 377 Blast hits to 377 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 175; Plants - 59; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Link
InterPro Scan - TAIR