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16-2775-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 289582 [Map]; Strand: c
      • AT2G01650.1 - [+] show detail - plant UBX domain-containing protein 2
        Distance: -3089; Region: intergenic
      • AT2G01660.1 - [+] show detail - plasmodesmata-located protein 6
        Distance: 1021; Region: intergenic
    Flanking Genome Sequence: 16-2775-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGAAGTT 
    GTTATAGTGC TATCGCGGGT GGAAATCACA GCTTCTCATC CGGGAATGGC 
    ACCGGTCCCA GTGTCAATAT CATGGATTCT GCTAAATAGG CAACTGACAA 
    CCAGTCGTAT GACTATTTCA TTGAGGCTTC TTCTTTTCGA CTGGAGCGTC 
    GATTAAAAAA TTGGGATTGT TCCTCGCACA AGGTGGAGAA ACCAATAAAT 
    TTGGTGACTG CAACGAAGAG GTGTGAGTGT TGTGTGATGC ACGGGGCCAT 
    GAGGGAGGAA GCAATATTTT CATCAGCCCG AGAATATGAT CACCACACAG 
    CTTCTAGGGC TTTTTCAAGA ACCGTCGGTA CCATTGTCAT CTTTGTTGGT 
    GTCTTTGGAT TCAAGACTTC TATGTCTTAC ATGTGAAACT TGTACAAAGA 
    GGGTGTCACA GCCTCCCATT GAATAACAAG TTGCGGCTCA AACGCAAGCC 
    AAAGAGACGA CATATGCAAT TAAGACCCAG CTGAGTAACG TCAAGAAAAA 
    CTTTCTAAAG ACTAGTTCAT GATCCTAATA TAAAATATTA CTTCTTCTGT 
    TTCATATTAN TTGTGGGTTA AGGTATTTAC ACACATATTA AAAAATCATC 
    AAAATCTTAT TTAATCTACC TCTTTTATAT AACAATATCA TTAATTATAA 
    CCAATAGAAA AATATAAAGT TAAATATAAT NGGTTTAAAA AATATTAAAT 
    ACATTTATTA TTTACATAAA AGGTTGAAAC AATATTTATT TTNAAAAAAA 
    AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 289664 [Map]; Strand: c
      • AT2G01650.1 - [+] show detail - plant UBX domain-containing protein 2
        Distance: -3171; Region: intergenic
      • AT2G01660.1 - [+] show detail - plasmodesmata-located protein 6
        Distance: 939; Region: intergenic
    Flanking Genome Sequence: 16-2775-1 - 3-prime edge 
    CTTGGTATCA GCGTTCTGAA TCATCATCGT CATTGTCTTA AGAAGTTCTT 
    TAATATATTA TGTACGATAG CGTCTACAAT CGCATGTGTA ATCTCTATAG 
    TAGACAATAC TTTTTTTCTC CTTTAACATG TTTTGTTGGT GTCGATGTTG 
    AGTCTAACTA TATTCTTTCA TTTCTTGGTA ATTTTTTTAC TCGATGTTTA 
    AAATCGAATT TTATTTCANT TTTACAATGT AGTTAAATTA GCCAGTATGG 
    CTACTTTAAC ATTGGA

AT2G01650.1

Model type
Protein coding
Short Description
plant UBX domain-containing protein 2
Curator Summary
encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.
Computational Description
plant UBX domain-containing protein 2 (PUX2); CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), UBX (InterPro:IPR001012), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 563 Blast hits to 563 proteins in 115 species: Archae - 0; Bacteria - 15; Metazoa - 269; Fungi - 22; Plants - 176; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01660.1

Model type
Protein coding
Short Description
plasmodesmata-located protein 6
Curator Summary
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational Description
plasmodesmata-located protein 6 (PDLP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 7 (TAIR:AT5G37660.2); Has 1458 Blast hits to 1310 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR