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16-2925-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22371891 [Map]; Strand: w
      • AT1G60780.1 - [+] show detail - Clathrin adaptor complexes medium subunit family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-2925-1 - 3-prime edge 
    TNAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCTCG 
    GGAAGAACAT GGCAGGAGCG GCCTCGGCTC TGTTTCTGCT CGATATCAAG 
    GGTCGTGTTC TCGTCTGGCG TGATTATCGT GGCGATGTCT CCGCTGCTCA 
    AGCCGAGCGA TTCTTCACTA AGCTCATCGA GAAAGAGGTT TGTTCTGATC 
    TTCCTCTTAT CGCTAATTGA TCTTTGTTTA TTGCTTGATT CCTGTAGAAT 
    TGTCAGAGAA ACACAGAGTT AGCGAACGAA CTTGTAGATT TGTGTTTGAA 
    AGATTCGTCA ATTGGAATTG AAACATTTCG AAGATAATGG ATTCGTGTCC 
    ATTTTCATCT GCACTGGAAA TGAATTTTGA AGATAATGGA TTCGTATCAG 
    TCTTTGTGAT CTGATGCCGC TGAAATTTTT TGGAAGTAAT GAACAAGTTT 
    GATCATTGGT TAAATGTTTT GGATTAGAAT TTGATTTGAA TCTGTACTTT 
    TGAAGCATTC TGGTTTAAAT CAGAGTAATC ATCGTTTTGT TTAATTGTTC 
    AGGGTGATTC ACAGTCAAAT GATCCAGTTG CTTACGATAA TGGGGTGACT 
    TATATGTTTG TACAACATAG TAATGTATAC TTGATGATAG CATCCAGGCA 
    GAATTGGTAA TGCTGCCAGN CTTCTCTTCT TTCTTCACCG NNTTGTCNAT 
    GTAAGTATNG CTGGNCATTC TTTAGTTTTC TNTTAANGGT CCATCTTTTT 
    CCCTGGATNT TTGNNNG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22371985 [Map]; Strand: w
      • AT1G60780.1 - [+] show detail - Clathrin adaptor complexes medium subunit family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-2925-1 - 5-prime edge 
    CAAATGGGGA TGATTAATCA AGCGAGATCT GATGAAAATA TGGTTCTGTG 
    GAGAAGAAGA AGTAGCAACA TCTAGATGGA GATTGACGCA GATCTCTCGC 
    AGCTCAGATT CTCCATTTCG CAATTGTTTT TTTTTTCNGG CNATCTGANN 
    ATTNCGTTNT NGTTNCTNGG GGTNGGATTA AAAAAAAACC GGNAAAATTT 
    AAAAAAANAN NANTTTNCAA AACCAAAAAC CTNNGGNTTT NNCCCAAANA 
    ANCCCGTTTN NNTTTTNCCN CCAAATTNAN NCCCNNCAAA NGNAAAANNN 
    TAAAAAANGG NNAGGGANCA AAAAANGNCN NNNTTAAAAA AAAANGGCCC 
    NTGGGGNCNT TNTNNAAAGN NNGNCCCANN NAAAAANNGG TTNCGNGGGT 
    TAAAATTTTT NGGNTACCAA NANGNNNNNN AAAAATNGGT TTTTTANNCA 
    AGGNTAAAAG TAAACCCCTA AAACCGANTT TTTNCTTTNT CCCNAAAANC 
    TTTAGGGGAA NCTAGGGTTN ANGGGGNGGG NCCCCCCCCN GAANCCGGGG 
    GGGGTGGTTT NAANTTNNAN CCAAAAANCG NGNCNGGGNN AANAAANCAA 
    AGGNNGGGGN CCNCTTTTTN GGGGANTNAA AAAAATTNGC NCCCTTTNGG 
    CNNNCCCCCA TNNAA

AT1G60780.1

Model type
Protein coding
Short Description
Clathrin adaptor complexes medium subunit family protein
Computational Description
HAPLESS 13 (HAP13); INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G10730.1); Has 2206 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1107; Fungi - 506; Plants - 213; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).
Link
InterPro Scan - TAIR