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Mutant Lines
16-2930-1

16-2930-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 7553438 [Map]; Strand: w
  - AT1G21550.1 - [+] show detail - Calcium-binding EF-hand family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 16-2930-1 - 3-prime edge
```
TNAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCA 
ACGGCTAGGG TTTGAGGAGG AGGCAAAGGC TTGGGATTGT GGGAGAATGA 
TTCGAGTTCA TGACAAGAAT CTTGATGGTT TTGTTGACTT TGAAGAATT
```

5 prime edge [+] show sequence

Chromosome: 1; Position: 7553442 [Map]; Strand: w
- AT1G21550.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: 0; Region: exon1 (CDS)

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCGT TCCAACACAT CACGAAGCTC CTCCGCTGAA 
ATATAACCAT CTCCGTTCAC ATCGAACACA TTAAACGCCC TCGCAATCGC 
TTCATCATTA TCAGCAACAA CATCAATATT CTTCTTAGAT CCTTTGCTAT 
CTAAAACAGC GTCGTAGTAG AACCGAAGGA ACTCGTCTAA ATCGAGGCTC 
TGTTTACCAA CGATCAGTTC AAGCTCATCG GGAGTGTGTT CGGCCGAACC 
GAGTTTATCA AGAATCCAAA GGAGCTCGTC GAGGGTCACA AGCCCGTCTT 
GGTTCTTGTC GAGCGTCTTG AACATTCTTC GGAGATCGTT TGTAGTTATG 
AATGAACAAT CCATTTGATC AGAGAAGGGT AGTTTGGATC TTTTGGTTAT 
GTTGAGGAAA TGTGTAAATC TATTTATGGA GAAATTGTGC AATCTTTATC 
GTCTATAAAA CATATATACA CGTACAGCAA CATATTTATA TGATTAGTGT 
GTACGGAAGA GATTAAAGCG GAGGAAGGTT CCCGGAAATG GGTTATGAAA 
CGACTAATTT TATGAAAAAT GATGTTTCTA GAAGAAAAGT CAATAAACAT 
GACATTTAGC TAATTTTCTT GTGTCAACTA TGACATATAG CTACTTTTAT 
ATGAAAATTT GATAGCGNAT TNNATTATCA TCTTTGATTT TTTTTATATT 
AAGTAAAAAC NGNGTNAGAA TGANAA

AT1G21550.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 42 (TAIR:AT4G20780.1); Has 8971 Blast hits to 8616 proteins in 1133 species: Archae - 0; Bacteria - 20; Metazoa - 2955; Fungi - 1509; Plants - 3114; Viruses - 0; Other Eukaryotes - 1373 (source: NCBI BLink).
Link: InterPro Scan - TAIR