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16-3063-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1511962 [Map]; Strand: c
      • AT1G05220.1 - [+] show detail - Transmembrane protein 97, predicted
        Distance: 0; Region: exon1 (CDS)
      • AT1G05220.2 - [+] show detail - Transmembrane protein 97, predicted
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-3063-1 - 3-prime edge 
    GTGGTCAACG ACTCGGGAGA GAGGCAAAAA AAGATGGGAG CTTTGGGGAA 
    GCTGATCAAC ATCTCTCTGT TTTTCTTCTT CGCACTGATG GCTATCAATG 
    TACCGCTTCT CAACGGTCAA ATACTATTTC CTGGAATCTA CCCGAAGCTC 
    CTCACCGATC TGAAAGACTG GTACAGCTCT GAGTTCAACG ATTACCTCTT 
    CATAGAGAAG CCTCTTTTCT TCGTTGGACT CGTCTGGCAT GAGATCATAT 
    TCCTATTGCC TCTCTCCATT GTCAACATCT ACGCCATTCT TACCAGCAAG 
    TCGTGGTTTG GTACCACTTC TTTGTTGTAT GGAGCTTCTT TCCTCACTTC 
    CATGGTACAT TTTCTTCTTT CTCTTCATTT TCATTTGGCT CAGTCTATGT 
    ATATTTGTTT TTGATGTTGT TGATCTGTAA ATGTTACAAC TTTCTTGATT 
    TGGAAACGAA AATTCTTTTG GAGTTCTATA TTTTAGTATA TGTGATTGCT 
    CTGCTTCTCT GAGAAGGCTA GATTGTACCG CTTTGTTTGT AAGTTTCTTT 
    CACGTTTTGT TTTTGTGTGT TTTGTGAATC TCTAGGCTGC TATACTTGGA 
    GACATGATAG GTTCAGAGAA GGTGACTAAC AAATTGCTAT TGGCGTATTT 
    GCCTTTCGTG GGTCTTGCAA TTCTGGCAAT GCTTCNTGGT CTGGTGACTT 
    GTTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1511846 [Map]; Strand: c
      • AT1G05220.1 - [+] show detail - Transmembrane protein 97, predicted
        Distance: -61; Region: promoter
      • AT1G05220.2 - [+] show detail - Transmembrane protein 97, predicted
        Distance: -97; Region: promoter
    Flanking Genome Sequence: 16-3063-1 - 5-prime edge 
    TTGACCACAA AAATGAAACA GAAGAAGAAG AAGAGACGAA TT

AT1G05220.1

Model type
Protein coding
Short Description
Transmembrane protein 97, predicted
Computational Description
Transmembrane protein 97, predicted; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: Transmembrane protein 97, predicted (TAIR:AT1G05210.1); Has 151 Blast hits to 151 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 15; Plants - 75; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05220.2

Model type
Protein coding
Short Description
Transmembrane protein 97, predicted
Computational Description
Transmembrane protein 97, predicted; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: Transmembrane protein 97, predicted (TAIR:AT1G05210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR