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16-3079-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18057075 [Map]; Strand: c
      • AT4G38620.1 - [+] show detail - myb domain protein 4
        Distance: 2076; Region: intergenic
      • AT4G38630.1 - [+] show detail - regulatory particle non-ATPase 10
        Distance: 55; Region: intergenic
    Flanking Genome Sequence: 16-3079-1 - 5-prime edge 
    CTATTTGTTA CAGGTCTCTC GATCAATTCA GTAGAATAGC AGAGTCCTAA 
    ATTCGTAATG AACCTTGCAC AAGTGTCAAA TCTGAAATAT TCTTACGACA 
    GTGCAAAAAG TCTACATTGG TAATTAAATT TTGCTCACAT TTCTGCGAAG 
    TTATGTTTTT CTCCAAGTAA TTAAAGTCCC ACATGGCAGT TAGGTACTTA 
    ATTCCTTTGT TCTACTGTTG GCTCGTTTTT TTGTTCTTTT CAATCTAATT 
    TTTATATGCG CTTATTAGTC TGCTAATTGC AATCTATTTG CATTATTTAA 
    TTTATATTTA TCCCAAGATA TGTGTATTTG TCTGCTAATT GCCACATGCA 
    AGCTGTAGTT TTGATCATCT ACGTACGTGT AAACTATGCT ACACAAACAA 
    ATTGAATTGC TAAATATGAC TATCGTTAAA GACTTTTTAT TGGGGAAACT 
    TATTAGTGAC GAAATTTCTT TGTTCCCTTT TAGAGCAAGA AAGGGAAAGA 
    CAAAAAGAGT CACAAGACTC ACAAACTATA ACNTNNNNAA AAGAANGAAG 
    AAAAACTGAT NGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18057191 [Map]; Strand: c
      • AT4G38630.1 - [+] show detail - regulatory particle non-ATPase 10
        Distance: 0; Region: exon10 (3UTR)
    Flanking Genome Sequence: 16-3079-1 - 3-prime edge 
    ACAAATAGGC TTACTTTCTA AGAGCCCATT GACATAAAGT CCAATAAAAA 
    TTAAGAAGGA AGCTAGTCCT TGACTCGTAC AATAACAACA TTATAAAAAG 
    GCGAGAGAGA GAGAAAAAAC CAAATTTCAC AAGGCAGAGA GATTAGTTAA 
    ATTCAGTTCC AATCTCTATC AAACCAAAGA AACAAGAGGA ATTTTTATTG 
    AGACTCTCAG ATCCTTCTTC ACTTCTTCTC ATCCTCGCCT TTTTTGCTAC 
    TACTCTCTTC CTCCTCGGTA CGCTGTCATT TTAACCATAT ACATTTATCA 
    GAATCTTCTT TTTCAAATAA CAAAAAGATG TAATCATAAA CATCAACAAA 
    GACACACCTT TGACTCGTCT GGCAGAGACG CTAGTAGTTC TTTAACTGCC 
    GGATCATTTG GATC

AT4G38620.1

Model type
Protein coding
Short Description
myb domain protein 4
Curator Summary
Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.
Computational Description
myb domain protein 4 (MYB4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 32 (TAIR:AT4G34990.1); Has 9208 Blast hits to 8453 proteins in 515 species: Archae - 0; Bacteria - 0; Metazoa - 855; Fungi - 510; Plants - 6018; Viruses - 3; Other Eukaryotes - 1822 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38630.1

Model type
Protein coding
Short Description
regulatory particle non-ATPase 10
Curator Summary
Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities
Computational Description
regulatory particle non-ATPase 10 (RPN10); FUNCTIONS IN: peptide receptor activity; INVOLVED IN: in 19 processes; LOCATED IN: cytosol, proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), Ubiquitin interacting motif (InterPro:IPR003903), von Willebrand factor, type A (InterPro:IPR002035); Has 677 Blast hits to 665 proteins in 240 species: Archae - 0; Bacteria - 16; Metazoa - 271; Fungi - 148; Plants - 120; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link
InterPro Scan - TAIR