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51-0617-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9089452 [Map]; Strand: w
      • AT1G26260.3 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
        Distance: 74; Region: intergenic
      • AT1G26270.1 - [+] show detail - Phosphatidylinositol 3- and 4-kinase family protein
        Distance: 72; Region: intergenic
    Flanking Genome Sequence: 51-0617-1 - 5-prime edge 
    ATCTACNNAC NCTAATAATG TCNCCGAATC CCTCACAATT TGATGAACGA 
    TTCAAACAGN GAAGCTAAAT GTGGTGTACT CAATAGAAGC AGCCATTGGC 
    ATGATATAGA ACGATAGACG GGTGATGATA TGAAACAACA AAATGAAACA 
    AAGCTCTCTA ACTTTTCTTT TCTTTTCTTT TTTCCAAATC TACAAGTTAT 
    TTATATCACA AAAGATTTTA AGAAGTTAAA ACAAAATGAC AAACGAAACA 
    AATGACTAAT TTCTCTTCAT CTCACTCGAC G

AT1G26260.3

Model type
Protein coding
Short Description
cryptochrome-interacting basic-helix-loop-helix 5
Curator Summary
Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.
Computational Description
cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26270.1

Model type
Protein coding
Short Description
Phosphatidylinositol 3- and 4-kinase family protein
Computational Description
Phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 7 (TAIR:AT2G03890.1); Has 671 Blast hits to 650 proteins in 184 species: Archae - 0; Bacteria - 8; Metazoa - 176; Fungi - 103; Plants - 278; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
Link
InterPro Scan - TAIR