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51-1850-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17861207 [Map]; Strand: w
      • AT5G44340.1 - [+] show detail - tubulin beta chain 4
        Distance: -106; Region: promoter
      • AT5G44345.1 - [+] show detail - F-box associated ubiquitination effector family protein
        Distance: -906; Region: promoter
    Flanking Genome Sequence: 51-1850-3 - 3-prime edge 
    AAAGCGCAGA GTACAAAAAC AAATTATCTA AAACTATCAT GTTACAATGT 
    ACAAGATAAA ACAAACTATA AGGACCAATT TGAAAATAAC TATTTTAGAA 
    AACTTATTGA AGAAGACGTA AACTATATAT AGCTGATTAT TACCTATTCA 
    ACAAATCCCT CTTTTTAAAC CTATTCA

AT5G44340.1

Model type
Protein coding
Short Description
tubulin beta chain 4
Curator Summary
beta tubulin gene
Computational Description
tubulin beta chain 4 (TUB4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, protein polymerization, microtubule-based movement; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-9 chain (TAIR:AT4G20890.1); Has 23619 Blast hits to 23523 proteins in 4869 species: Archae - 36; Bacteria - 51; Metazoa - 4471; Fungi - 14157; Plants - 1545; Viruses - 0; Other Eukaryotes - 3359 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G44345.1

Model type
Protein coding
Short Description
F-box associated ubiquitination effector family protein
Computational Description
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR