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51-2338-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5590960 [Map]; Strand: c
      • AT4G08760.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: nucleolin like 1 (TAIR:AT1G48920....
        Distance: 0; Region: exon1 (CDS)
      • AT4G08765.1 - [+] show detail - transposable element gene
        Distance: -738; Region: promoter
    Flanking Genome Sequence: 51-2338-2 - 3-prime edge 
    CCTAGGATGC TTTGATCTTC TTCTTCGCAA ATCCCCCTTA CTGTTATGAA 
    CCATATCTTC CCTTCTCAAT GTTTTTCCTT TCCGGTTATG TTGATCCCAT 
    CTCTCCGTCA CGTCTCACCT TTTCTCCGGT TTCTTTTTCT TCTTTGCAAC 
    TAATTCTCTT CTCCTTGGTC ATATCACGTC CNCTATGCTA CTCCA

AT4G08760.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: nucleolin like 1 (TAIR:AT1G48920.1); Has 36 Blast hits to 36 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G08765.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.2e-158 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR