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Mutant Lines
51-2487-1

51-2487-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 2; Position: 15817223 [Map]; Strand: c
- AT2G37710.1 - [+] show detail - receptor lectin kinase
  Distance: -219; Region: promoter
- AT2G37720.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 15
  Distance: -859; Region: promoter

GCTCATGGAT TCTCTGCTAC TCCACTACGG TCNGGACANN AACTATCCTN 
ATNGATNACN CATTNAANTA TNGATATTTT GAGTATANAA ATGGAGTATT 
TTAAAACCAA ACAGANAGTT AATTAAGCAT TAATCTTGGA AGTTGTAACA 
CATATCACCT ACCTTCATAA TCTTTCTCAA TCACGANTAT ATCCCCACAC 
AAGGAAAAAT AAAAGAGCTA GTGACGACTT TTCCACTCTC TTCACACCAT 
AAATCGTCTC TCTTTCTCTC TTCACAAC

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 16042817 [Map]; Strand: w
  - AT2G38290.1 - [+] show detail - ammonium transporter 2
    Distance: -434; Region: promoter
  - AT2G38290.2 - [+] show detail - ammonium transporter 2
    Distance: -434; Region: promoter
Flanking Genome Sequence: 51-2487-1 - 3-prime edge
```
AAAACATAAC GTTTAATGTT GTATCCCTTT ATATGTACCT CTAATGTCCC 
TCTTTATTTA CTTTTAATGA TTTTTAAGAC TAAATATCTT CAGTTGAAGT 
AGGTAATCTT TTTGCCAAAT TAGTCTTCGC AATACACGGA TCGATTTCCT 
TATAAGATAT TAAATTTAAC TCATTCAAAA AATATTAAAT TTGCAATGAC 
TTATAAGATA AATAAAAACC AAGGTCCATA TCTTATCCCA ATTT
```

AT2G37710.1

Model type: Protein coding
Short Description: receptor lectin kinase
Curator Summary: Induced in response to Salicylic acid.
Computational Description: receptor lectin kinase (RLK); FUNCTIONS IN: kinase activity; INVOLVED IN: response to salicylic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT3G53810.1); Has 113290 Blast hits to 111820 proteins in 4637 species: Archae - 92; Bacteria - 13273; Metazoa - 41290; Fungi - 9298; Plants - 33316; Viruses - 357; Other Eukaryotes - 15664 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G37720.1

Model type: Protein coding
Short Description: TRICHOME BIREFRINGENCE-LIKE 15
Curator Summary: Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description: TRICHOME BIREFRINGENCE-LIKE 15 (TBL15); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf; EXPRESSED DURING: LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 14 (TAIR:AT5G64020.1); Has 1325 Blast hits to 1306 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1323; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G38290.1

Model type: Protein coding
Short Description: ammonium transporter 2
Curator Summary: encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.
Computational Description: ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;1 (TAIR:AT4G13510.1); Has 10296 Blast hits to 10279 proteins in 2052 species: Archae - 227; Bacteria - 4609; Metazoa - 555; Fungi - 427; Plants - 543; Viruses - 0; Other Eukaryotes - 3935 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G38290.2

Model type: Protein coding
Short Description: ammonium transporter 2
Curator Summary: encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.
Computational Description: ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;2 (TAIR:AT1G64780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR