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Mutant Lines
51-2527-1

51-2527-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 19540665 [Map]; Strand: w
- AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
  Distance: 0; Region: intron1 (CDS)
- AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
  Distance: 0; Region: intron1 (CDS)

GTCCCCACGT NTTCAATGTT CCCACCACAT TCGTCTTGTA TCCACACACA 
CAGAGTTAAG GACAAGAGCA AGCAAGATCC ATACTACATA TAACAACATT 
GATGATGATA AACTGAAATT CCTATAGAAG GAAAAGAAAA AGGATATGAT 
NTTCTTGACG GGATTGAATT TGTAGTGAAC AGGAGAAGCA GGGCATGCCA 
AATGGTAGAT CTGATCAACC TCTAGAAGGA TCGGCTCCAC TACATCGTGA 
CGGATCATCT CGAAATTAGG GTTATTGAAA TGGTGCATCA CGTTCTCTTT 
CCTTCCCGTG AAGAAATTGT CGACCACGAT CACGTTGTCT CCTCGAGCCA 
TCAACCGG

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19540549 [Map]; Strand: w
  - AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
    Distance: 0; Region: exon2 (CDS)
  - AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 51-2527-1 - 3-prime edge
```
GTTGGGACTA GCGAANAGAG TGGGAGCAAN ATTCTTGCTG ACGAGTACGA 
GTGAGGTCTA TGGAGATCCT CTNCAACATC CTCAGGTTGA GACTTACTGG 
GGCAACGTTA ATCCCATCGG TACTACCCCT TCATCTCCCT CTCTGCTACT 
CCACT
```

AT2G47650.1

Model type: Protein coding
Short Description: UDP-xylose synthase 4
Curator Summary: encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description: UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47650.2

Model type: Protein coding
Short Description: UDP-xylose synthase 4
Curator Summary: encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description: UDP-xylose synthase 4 (UXS4); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
Link: InterPro Scan - TAIR