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51-2751-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 483039 [Map]; Strand: w
      • AT5G02310.1 - [+] show detail - proteolysis 6
        Distance: 256; Region: intergenic
      • AT5G02320.1 - [+] show detail - myb domain protein 3r-5
        Distance: 84; Region: intergenic
    Flanking Genome Sequence: 51-2751-2 - 5-prime edge 
    TGTTGTGTTC TGATATCACT TCGATGTCCG AAGATGGAAG AATTTTCAGT 
    GTCTTCGTCA ACTATGTAAC ATCATATACT CAAAAGCCCT AAAAATAAAA 
    AAGAATTAAC CAAAATTCTA ATCCTTTAAA ACTAGTTTCT GCACAATTAT 
    CATTTTAAAC GTAAACAGGA CACCATGTAT GTGAACGATG AAATTAAACT 
    ACTTGTGAGT GTACCTACCT ACCTATTTCA TTTTAGTTCG GGTGTTAGAC 
    CAAAGCCGTA GATTCATAGC TCAAGGCTGT GAGGAAGAGA ATGAGAATTG 
    TTTTTCTTCA CGGTTCTCTT CCCAGCAAAG CTTCAATTCT TCTGGAACCA 
    TACTGGTTTC TTCACATGAT CTCTGTGTCA ACAAGG

AT5G02310.1

Model type
Protein coding
Short Description
proteolysis 6
Curator Summary
Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.
Computational Description
proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02320.1

Model type
Protein coding
Short Description
myb domain protein 3r-5
Curator Summary
Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5).
Computational Description
myb domain protein 3r-5 (MYB3R-5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR