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52-0006-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8873022 [Map]; Strand: w
      • AT5G25480.1 - [+] show detail - DNA methyltransferase-2
        Distance: -760; Region: promoter
    Flanking Genome Sequence: 52-0006-1 - 5-prime edge 
    ACAATNATTA NGNCTCCGAN ACCAANTATT CCTGAATGGT ATNGNNCCAT 
    AANACACGAG TCTTAGTTCC GTTTTACTNT CCTGAANNAT CTCATAGAGT 
    GATCTCCTAA TCAATNNGTT GAACCTCAGA ATGATCTACC CGAAACAATA 
    CTAAATCTCT ATCGAGAACC TGACACGGAA TTTGTTAACG AGGTTCGGTT 
    TTTTCTACTC TCCGGGACCA CGTCCAGATT TCGATTTCAC TAGAGCAAGA 
    AAACAAATAC AAGTTATTCG CAAACGCATA AACCAAACAT AACCCAATAG 
    ATTCACTGCT CCATTCTATT AACATGAAAT CTTAAGGATA AATCTCTACC 
    GTTAACTANA CTCACCTGAG CCTANATTTA ATTAGGATAA CCTAACCCTG 
    AGTTAAACTC CACTTGAGCG TATACTTCAA TTCTCCAGAT CTCTGATACA 
    TCACTA

AT5G25480.1

Model type
Protein coding
Short Description
DNA methyltransferase-2
Curator Summary
Encodes a DNA methyltransferase homolog. Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro.
Computational Description
DNA methyltransferase-2 (DNMT2); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR