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52-0016-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13063555 [Map]; Strand: w
      • AT4G25610.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: intron1 (5UTR)
      • AT4G25610.2 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 52-0016-1 - 5-prime edge
    CTGGTACGTG ATCGGACTAA CCATTCTCTT CTCATGAACA CACACTAAAT 
    CGATTTGAAT T
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13063439 [Map]; Strand: w
      • AT4G25610.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G25610.2 - [+] show detail - C2H2-like zinc finger protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0016-1 - 3-prime edge
    CGTACCAGTA AAAAAAAAAN CAGTANCAGA TCGGNCGGNA ANTAGGAGGA 
    ANAAAAAAAT CGANANCGAN CCTTNTGGGG ATTCAAAGGA CCTTGGGNCG
    GAAAAAAGTC CCCGAAAAAA TCAAAAAAAG NGNTGGGNCC CNAAAANGGN
    NAANANANAA AANTGANANA AANTTTCGGA NANAGGNGGN GGNGGCAAAA
    AACCTNTGGA AAAAAANTTN TAANGGCCTA NTCCGGGCAA NCAAAACANC
    CCTTGGGGCT CAANTCNCAA AAAANTCCNC CAANTTTTTG ATCAGTAAAT
    TTGTTTTTTT GTTTTAAAAA TANCTAAAAA ANAAAAANCT TTTTTTTTTT
    TTTTNNNANC CCTTTTTTTT TTTTTTTTTN ANCNNNNAAA ANTTTAAAAN
    AACCNNTTTT TTTTAAAAAA ANTTTTNGGG NTANCCNTCC AAAATTTTTN
    TTTNTNNANC ATTNGNTTAA ATTTTNNGGG CCCANNNNTN GNAAAGGNNN
    CCAATTCCAA ATTTTTTTTT TNTTNGNATT TTTTTTNAAA NTNGNGGGNC
    CCAAGGGGGG TTTTTTTTTT NCCCAAANAA NTTCCCATTT TTTTTGGNAA
    AAAATTTTCC ATTTAAAAAT TTTCCCNGTN NCCTAACCNC CCTAACCTTT
    TGNTANCCNT TTTTNAAAAC CTATAAAATT TNGGGCTTAA ANAATAACNT
    TTNGGNGGGG CCNNAACCTT GTTAAACNAN CCCACNTTTT TTTATA

AT4G25610.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 1178 Blast hits to 1100 proteins in 218 species: Archae - 0; Bacteria - 148; Metazoa - 375; Fungi - 111; Plants - 98; Viruses - 2; Other Eukaryotes - 444 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25610.2

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); Has 400 Blast hits to 392 proteins in 117 species: Archae - 0; Bacteria - 39; Metazoa - 136; Fungi - 49; Plants - 38; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR