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52-0025-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 435018 [Map]; Strand: c
      • AT4G01010.1 - [+] show detail - cyclic nucleotide-gated channel 13
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 52-0025-1 - 3-prime edge 
    GTCTGAACTG TGAAGCAACA AGCTTGAGAT CATCTGCTGC AAGAGCAAAG 
    GCTTCTACTT CGGTTAAAGC TTGAACTGTT CTAGTCGATA TCGGAAAATG 
    AGACGAAGAT TGAGGATCCA ATGCCCATGT GAGAAGATC

AT4G01010.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channel 13
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide-gated channel 13 (CNGC13); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR