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52-0026-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 434904 [Map]; Strand: c
      • AT4G01010.1 - [+] show detail - cyclic nucleotide-gated channel 13
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 52-0026-1 - 5-prime edge 
    AACTTCAGAC GACTACATAG CAAACAGCTT CAACATACTT TCAGGTTTGC 
    TTGGTCTCTT TTGACTGATC TCTCTGCTNC NTCACTATCC GGTTCTGTTT 
    GGTTTAATTC GGTTTAACTG TCAGGTTTTA TTCGGTTCAA TGGANAACTT 
    NGGGTGCGTC TTTCATACAA GCGGCGTGGC GGAGACATTG CCGGAGGAAA 
    CTAGCTANAT CATTAACCGA AGAAGAAGAT AGATTCCGAA ACNCGATCGC 
    AAAACGCGAA CGCGATGCGG CGTCTTCGTC TAGCCTGGTT GCAACGTTAT 
    ACGCGTCGCG GTTTTGCTTC AAACGCGCTT TCGCAATCTC CGTACAAACA 
    ACCTTCCTTT GCTACCTCCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2066544 [Map]; Strand: c
      • AT5G06700.1 - [+] show detail - Plant protein of unknown function (DUF828)
        Distance: 505; Region: intergenic
      • AT5G06710.1 - [+] show detail - homeobox from Arabidopsis thaliana
        Distance: 1521; Region: intergenic
    Flanking Genome Sequence: 52-0026-1 - 3-prime edge 
    ACTATTTGGT TGGAGAATGG GAAAAACACA AGTGTTTATG TTTGTGTATA 
    AAGTAAGATT ACAGATGCTT AAATTGTCAA ATTGATGAAA ACTGGAAATA 
    TCTGAAGTAC GCAACACGAG ACTCACCCGT ACACATTTAC TCTTTTATGA 
    AAAAAGGCCA TAGGGTAAGC ACCAAAATAT ACAAAATTAG TAGTACTACA 
    TTTTAAGCAT CCAACAATTT GTGACCTCCA ATGGTGATCA TTCCAAGAAA 
    CTTCTTTAGG AATAGTTTTT ATAACCACAG CAAATTAAAC TACTAACACC 
    TCCTTAAGTT ATTTGATAAG CGCAACAACA GTGCATGGTA CATTTGAATA 
    TAACATGAGT TCATCAAAGT CTTCATTCCT AATGAGAAGT TAATGAGTTA 
    ATGAGTTAAT CAAAGTCTTC ATTCCTAATA CAATAATTGC AAAATTGCAG 
    TTTTAGAAAT AAGAGTTTTG TTTAAAAACA AACGTTCCTC TTCTAGCTAT 
    TCATATCATG ATCAGTCGAC GCCACCCAAC AAAAGACATC ATCTCAATGG 
    GGCTTATACA TCAATCAAAC TTTGTTTTGT GTGAAGTAGA GGATGAAACA 
    AGATAGTAGA TCCAACTTGC TTTTCTTGTG TTCTTCTACA TGCAGGAACA 
    GTCTGGCGCA TGTTCAAAAG AGAATTAATC GCCTAAACAG TACATCTTTA 
    ATGATACAAT CTTGTGACTG TTCTCGTCTT GNGTTAAAAG

AT4G01010.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channel 13
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide-gated channel 13 (CNGC13); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06700.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF828)
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). A tbr mutant is impaired in its ability to deposit secondary wall cellulose in specific cell types, most notably in trichomes.
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plant-type cell wall modification, pectin biosynthetic process, cellulose biosynthetic process, secondary cell wall biogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G12060.1); Has 18773 Blast hits to 6666 proteins in 584 species: Archae - 22; Bacteria - 3086; Metazoa - 4181; Fungi - 2776; Plants - 1414; Viruses - 506; Other Eukaryotes - 6788 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06710.1

Model type
Protein coding
Short Description
homeobox from Arabidopsis thaliana
Curator Summary
Homeobox-leucine zipper protein.
Computational Description
homeobox from Arabidopsis thaliana (HAT14); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein family (TAIR:AT4G37790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR