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Mutant Lines
52-0119-1

52-0119-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 25630122 [Map]; Strand: w
  - AT5G64040.1 - [+] show detail - photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, p...
    Distance: -605; Region: promoter
  - AT5G64040.2 - [+] show detail - photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, p...
    Distance: -507; Region: promoter
  - AT5G64050.1 - [+] show detail - glutamate tRNA synthetase
    Distance: 0; Region: exon13 (3UTR)
Flanking Genome Sequence: 52-0119-1 - 5-prime edge
```
NACATTATAG TCTACAAATT TCTTTGTGCC ATTTGTNTNG GGAAACAAGA 
NNTGCACGGA GGAANCAANA TCTCTGGGCT GTCTTTCTCT CACCAACTAA 
CCAAATATTG AAGGAAAAAA AAAAAAAAAA NGGGGGGGNT TTTNNGGGGG 
NAANNGGGGG GGGNAAAAAA AAANNNNNCC CNTTTTTTTT TTTNAAAAAA 
ANNNNCCCGG GGNNNGNNNC CCCCCGGNCC NNNAAAAAAA AANAAANNNA 
NAAAANNNNN ANNNNNNNNN ANNNNNNNNA NANAANNNNN NNNA
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 6567352 [Map]; Strand: c
- AT5G19470.2 - [+] show detail - nudix hydrolase homolog 24
  Distance: 0; Region: exon5 (CDS)
- AT5G19470.1 - [+] show detail - nudix hydrolase homolog 24
  Distance: 0; Region: exon5 (CDS)

TTAAAACGGT NGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCA 
TCAATGGGTA TGTAGAAAGA GATGGACAAA AATTTCTATG GATAGGTAAA 
AGAAGTCTAG CAAAATCCAC TTATCCAGGA AAACTTGATC ATCTGGTTGC 
TGGAGGATTG GTAAGATTTC TCATTTACTT GTCGATTATA CATCATGTTG 
TAGAATGTCC TATATATACC AGATAATAAT AATTCTTATT TGAGGGAATC 
GAAATGCACA TTTTTATTCG GTCATTTGGT GCATAGCCTC ACGGGATTAG 
CGTTTGTGAG AATCTAGTAA AGGAATGCGA AGAGGAAGCT GGGATTTCCA 
AAGTCTTGGC TGATAGGTAA GACACTGAGC CATGCTTTAT GTGGTGTTGG 
AAAGGCATAT TTGCCCAAGT CCACACACAA AAAAATTCTA AAACTAAAAA 
AGGCTACGAA AGTGCTAATT CCTTGTGTAA AATATGTATC TCAGCAAATT 
CCTTGTGTAC AATATCATCA GTATATTGCA ACAACCTTTT ACTATGATTT 
GAACTAAAAA CTTCATAAAA AATTCGCTTA AAAATCAAGA TAGTTATGAC 
TTAATAGTTT AAATAAAATT TGGTCCCAGC TGGTCAAAAA GTTTTTGGGG 
TGGATGCCAC ATTATTTGAT TCACCCAAGT GTATGTGTAC ATTCTGCTCA 
GTATTTAACA AAGTAGTACC TATATAGCTC TCTTGATATT TTCCACCTCT 
TTGCATTTTT TGGGTATTCT TAAAGGGCGA TTGCGGTCGG NGTTGTTTNC 
T

AT5G19470.1

Model type: Protein coding
Short Description: nudix hydrolase homolog 24
Computational Description: nudix hydrolase homolog 24 (NUDT24); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: vascular tissue, male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 20 (TAIR:AT5G19460.1); Has 735 Blast hits to 734 proteins in 306 species: Archae - 0; Bacteria - 325; Metazoa - 73; Fungi - 189; Plants - 55; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G19470.2

Model type: Protein coding
Short Description: nudix hydrolase homolog 24
Computational Description: nudix hydrolase homolog 24 (NUDT24); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: vascular tissue, male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 20 (TAIR:AT5G19460.1).
Link: InterPro Scan - TAIR

AT5G64040.1

Model type: Protein coding
Short Description: photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
Curator Summary: Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex.
Computational Description: PSAN; FUNCTIONS IN: calmodulin binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G64040.2

Model type: Protein coding
Short Description: photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
Curator Summary: Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex.
Computational Description: PSAN; FUNCTIONS IN: calmodulin binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, photosystem I, chloroplast thylakoid lumen, chloroplast, chloroplast photosystem I; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G64050.1

Model type: Protein coding
Short Description: glutamate tRNA synthetase
Curator Summary: Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.
Computational Description: glutamate tRNA synthetase (ERS); FUNCTIONS IN: protein binding, glutamate-tRNA ligase activity; INVOLVED IN: chloroplast organization, glutamyl-tRNA aminoacylation, mitochondrion organization, tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial (InterPro:IPR004527), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Aminoacyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR008925), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 (InterPro:IPR020751); BEST Arabidopsis thaliana protein match is: Glutamyl/glutaminyl-tRNA synthetase, class Ic (TAIR:AT5G26710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR