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52-0145-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22103866 [Map]; Strand: c
      • AT1G60020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0145-1 - 5-prime edge 
    CCTAATATTC ACAAAAATCT AATATCGGTT TATCGAATGT GTAACGCTAA 
    TAAGGTGTCT GTGGAATTCT TTCCTGCACA TTTTCAGGTG AAGGATCTCA 
    AAACGGGGGT CCAATTGCTC CAAGGCAGGA CTAGAGACGA GCTGTACGAA 
    TGGCCANTGA ATCCTCCTAA ACCGTCATCC CACCTCACTA CAACCACTCC 
    AAAAACCGAT CTCACCTCAT GGCATTCACG TCTTGGCCAC CCGTCTTTAT 
    CTACTTTAAA AGTTGTTGTT TCTCAATTTT CCCTTCCTGT TTCTCATTCT 
    TTGCAAAAAC AGTTCCATTG TTCTGATTGC CTTTTGAATA AAACACACAA 
    ACTTCCCTTT CATACAAACA CTATTACCTC TACTCAACCA CTTGAATATC 
    TATACACTGA TCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22103991 [Map]; Strand: c
      • AT1G60020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0145-1 - 3-prime edge 
    GCATATAACA CATCAGTCAA GGCAAGAGAG CGAGATGGTG TTGTAAGTAA 
    AGCCGAACCA GTGTGAGAAA TGGACAAACC AGACCCGTCA GCAATAGTGA 
    CATCTTCACC GCCAGTGTAT GGTTGGTGAA GAGAGAGATT GTTCAAGTCA 
    GAGGTGATGT GATGAGTANC GCCACTATCG AGTAACCAAT TGTTGGCGTT 
    GTATGGCAAG GCCATAACCG CATTAGCTCG TGGCTGCCAC GGCGTGAATG 
    GTGAGGCTGG GAGTGACTGT TGCGTGTTGT ANGTGCTGCC TTGAAGTTGA 
    NGACACCGGC GTGCACTATG CCCATGAATG CTGCAGATTT GGCATCGTCC 
    TTGATACGGT TTGGTGTGTA TTGGTT

AT1G60020.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)
Link
InterPro Scan - TAIR