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52-0146-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13948660 [Map]; Strand: w
      • AT5G35777.1 - [+] show detail - transposable element gene
        Distance: -568; Region: promoter
    Flanking Genome Sequence: 52-0146-1 - 5-prime edge 
    CCTCGACATA ACATTATGTA AATACTTTTT GACTAAAAAT AGTACCATTC 
    ACCCTTCTAA CTCTATGTNA ATTTGACTAC AAAAACATTT TGACAAAAAA 
    ATGAACGATT ACAAATTACA CTGATGGAAA ATATACTTAG TCGAATAACC 
    ACCAACGGTT GAATGTAAAT GTGGAGTTCC AATTATTAAT CATTTTTTTC 
    GGCACTCAAT TCACGAATGT GAATCACCAC TAACGCATCT AGGAATATAT 
    ATAGTAAGGT ATACAACTTA TTTTTTAATC AAAACAAAAA AATATTTGTA 
    GATTTTTGGG ACCTTTGGTT TTCCTTAAAA TAGATAAGGG AATATTGGAG 
    GATAGATATG AATCTATATG AATTAGAATT TAAGGTCTTA AATCCCTTTG 
    TGATAAGGTT TGGGATACCT ATATTTTAAG ACTATGCTAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13948544 [Map]; Strand: w
      • AT5G35777.1 - [+] show detail - transposable element gene
        Distance: -684; Region: promoter
    Flanking Genome Sequence: 52-0146-1 - 3-prime edge 
    TGTCGAGGAC ATAAAGACTC CACGCATTTA GTTTTGATCA TGTTAAGTTG 
    GAAATAACAA CAAATGGTAA AAACTTGATT ATTCTTAATG TTGGAGATCA 
    TGCTATAAAC CTAATGTTGT ACTTGATTTA TAGGCTGTGA GAGAAATCTC 
    AGAAATTCTA AAATGAANAT ANATCGTAGG TTTGACAAAT AATTGTACTA 
    GAAAGCCACA TGGGGATTAT GGAGGTATTT GTTAAAACCT AATGTTTGAC 
    AAATGGAGTT TTTAAATGTA ATTTGAGTTA TGCATAATAT AGCAAGTCTA 
    TAAAACTAAA CCAAACAAAA GTTCGGAAGA TTTGCAATAT ATTTAATTTA 
    GATTTATCAT TTGGATTTTA TGAGAAGAAT AGTTCTAATA TAAAATTATC 
    TAA

AT5G35777.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.0e-67 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR