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52-0155-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 37397 [Map]; Strand: w
      • AT4G00100.1 - [+] show detail - ribosomal protein S13A
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0155-1 - 5-prime edge 
    CTCAAGACCA CCTCTCAGGA TGTAAGTTGA TATCATCTCT ACTTTTTTGC 
    TCTGCTTTGT TGAATGAATC ATGCCTTCAC ATTATTATTA TTACATTTGA 
    CAGGTTGATG AATCAATCTG CAAATTTGCC AAAAAGGGAT TGACCCCTTC 
    CCAGATTGGT GTGATTCTCC GTGACTCTCA CGGTATCCCT CAGGTCAAGA 
    GTGTTACTGG AAGCAAGATC TTGAGGATAC TCAAAGCTCA TGGTGTGTTT 
    TTAATTTCCC AATCTTTCGT TCTGCATTTG TCATTTTGGC TTATGATGTT 
    AATGTCATAT TCATACACTT GCAAGGCCTT GCTCCTGAGA TCCCTGAGGA 
    TCTGTNCCAT CTAATTAANA AAGNTGTTGC CATCCGTAAA CATCTCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 37273 [Map]; Strand: w
      • AT4G00100.1 - [+] show detail - ribosomal protein S13A
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0155-1 - 3-prime edge 
    CCAGCTTGGA GACGATCTCT TGTAAGGCAA CGCAGAGGCT GAAATACCCT 
    TTCTACATAA ATGATAGCGA TATGTTAGAT TTCACAATTG ACGTAACTAT 
    AATACGAAGA AGACGAAGAA GAAGAACANA CCCTCGACTG TGCATACGAC 
    CCATGGTGGC NNATTCTCAC ACTTTTCTCC TACGGATGCG CACTGACTGC 
    TGAAGACAAA GAGAAACCCT AATTCTGGCT GTTATTAGAG AGTGTGCTTT 
    TTAGGTTATA TTCGGGACTT ACGTGGGCCT TTCATATTTC TGGCCCAGTT 
    TTCAATTTGC CTCAAAAAGC CCATCGGAAT CCACGACCAG ACACATCTCT 
    GATACTCCA

AT4G00100.1

Model type
Protein coding
Short Description
ribosomal protein S13A
Curator Summary
Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
Computational Description
ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Link
InterPro Scan - TAIR