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52-0157-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1087476 [Map]; Strand: w
      • AT5G04020.1 - [+] show detail - calmodulin binding
        Distance: -930; Region: promoter
    Flanking Genome Sequence: 52-0157-1 - 5-prime edge 
    TGAGTAATGT TCCAAAGTTT AGGTCATATA ATATAGATTT GATTTGACTG 
    AATCATAAAT CAAGCTTGTA TCATGATTTT ATGATCTAGT AAAAGTAGGG 
    CCACAAGAAA GGTAGTAGTA GAAAGATGTA CCANTAAAAG TTAAATAAAT 
    AGAACGCGTA ATTGTGGGAC CCTTCTTAAA CATGTGTTTG ATTATGACAC 
    ATCTACCATG TGATTTCAAA TATCCCTCTG AAATCACCTG TTTTTAATCA 
    ATTTTGAAAC TTGTAGATTT ACAACTTACA AGACATAACA AATATATACG 
    CACATCAAAA ACAAAAGTTA AATATNCANA TTTTCTTACT ATATAGCTGA 
    TCTTAGATAA CTTCCTATTT CGTATTTTTA ATTCAANGAA AATCGAGTGT 
    GTTGGAATAT GC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1087360 [Map]; Strand: w
      • AT5G04020.1 - [+] show detail - calmodulin binding
        Distance: -814; Region: promoter
    Flanking Genome Sequence: 52-0157-1 - 3-prime edge 
    ATTACTCAAA GTGAAACATC AATAACTCAT TAACACATNT GATTACTGTT 
    GAAGTATCCT CTCTAGTNTT AATACCAACT AATTCTTTCC GNTCAAGTGT 
    CAACTATGTA TANATCTCTA TATATATTAC TAAATAGTTG AAATATCTTC 
    TGATTTTTCA CAAATAATTA CGTAGTATTA TTAGCGAACT AACACCCACA 
    TTCCCTGTTC AATTAATTCA CCAACCTCNA TTAATATGTG TATTAAGCCT 
    GAAATTATTA GAGACAGATA TTTTGTGCCT CACTATATCA TTAAATGTCG 
    TTTAAATGTT CTTAGTCAAT GAACGCTCTT TCTTTTCAGA TTTCTTTTCT 
    ATCAACAAAA ACTGATACTA ATATGTCTAT GATACT

AT5G04020.1

Model type
Protein coding
Short Description
calmodulin binding
Computational Description
calmodulin binding; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT2G38800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR