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52-0201-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 126431 [Map]; Strand: c
      • AT5G01310.1 - [+] show detail - APRATAXIN-like
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0201-2 - 5-prime edge 
    CTGGCAGATA CGAGACCAAG GGCGGTGAGA GGAACGCATT GCGGTGTCNC 
    AANACGTCGA TTTGCCGCTT CCTGGTGGAC CAATCAGAAN CACCACTATC 
    TGCTTCGCTT TGTCTGCTTC AATTGATTCC GGAAAGGTTT GATTTTTACC 
    ATATTCTTCA ATTTGCACTT CCATCTTCTC TCGTTGATCG GCGAANTCCT 
    CTGTTTCTCC GAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 141452 [Map]; Strand: c
      • AT5G01335.1 - [+] show detail - transposable element gene
        Distance: 165; Region: intergenic
      • AT5G01340.1 - [+] show detail - Mitochondrial substrate carrier family protein
        Distance: 1603; Region: intergenic
    Flanking Genome Sequence: 52-0201-2 - 3-prime edge 
    GAGCGCTAGT TTCCAAATCG TAAAACCATT ANGAACTTAT GTGANATAAG 
    TGAAAATGTG AAATAACTGT TTCATTTCGT CNAGTAGACA CGTTAAAGTG 
    TTGAACATTT TGGGTAACAG AGAACTATTT TTGTCCATTA TAATGATCGC 
    ATTTGACGTC TCATTATATG TGTGACGTAN GTGTCAAGAA CCCTTTGACT 
    ATACCTGATT TGAGAACAAT TTAGGCCCAA ATGAAAAATT AGCCATAATT 
    TTGCAGCATC AGCCCAACTA AGACTATTCT CAGACAGAAG GAAATTTTGT 
    TCTCAAATCA AATTTTTCCA CAAAAATTCA TAACCCTAAC GTTTCATGAT 
    TATTGGACAG CCTATGTCNA AATGAGTTCG GACTATTAAC AGACGGGCCT 
    AAATGATTTT AGC

AT5G01310.1

Model type
Protein coding
Short Description
APRATAXIN-like
Curator Summary
Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.
Computational Description
APRATAXIN-like (APTX); FUNCTIONS IN: adenylylsulfatase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: sulfur metabolic process, purine ribonucleotide metabolic process, regulation of transcription; LOCATED IN: intracellular, nucleus, chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Appr-1-p processing (InterPro:IPR002589), Histidine triad (HIT) protein (InterPro:IPR001310), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Histidine triad motif (InterPro:IPR011151), Helix-loop-helix DNA-binding (InterPro:IPR011598), Histidine triad-like motif (InterPro:IPR011146), Histidine triad, conserved site (InterPro:IPR019808); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G21330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01335.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.4e-29 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT5G01340.1

Model type
Protein coding
Short Description
Mitochondrial substrate carrier family protein
Computational Description
Mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G37890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR