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52-0219-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8141225 [Map]; Strand: w
      • AT1G22990.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 1023; Region: intergenic
      • AT1G23000.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -2179; Region: intergenic
    Flanking Genome Sequence: 52-0219-1 - 5-prime edge 
    NATAAGATCC GACGGCAAAC ATTTTGTGCG CATGGGTCCA ATTGTATCTC 
    TACGTAATTA ATGGTATTGT TCCTCGGTGG AAGTAGATAT GTCGACGATG 
    ATGTCTTTGG ATAAGATAAG ATATTTGTTA GACAATACAT ATATAATGGA 
    AATTAAATAA TTCAATGTGC AATTGCTTAT CTTTGTATGT GTTCATTTTT 
    TCAAAACAAT TTTGGAGTAT AGCATGGTTT GGCGACAACC AGTAAGGGGA 
    CAAGTTTTCT TGTTAATAAA TTTTATTAAT TCTGTTCCTT ATAATATTAC 
    GTGGTTGGTT AATCAAATGA TACGTACGTT GAACTTTCAA TCTAGACTAA 
    TAGAAGACTT CC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8141156 [Map]; Strand: w
      • AT1G22990.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 954; Region: intergenic
      • AT1G23000.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -2248; Region: intergenic
    Flanking Genome Sequence: 52-0219-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
    TTACACTTGT CGTAGGTGCA CAACAAAGGG CAGAGATGGC ATATAATTGT 
    TTGATGTTTG GCTTTTCACT TGCCAACGAT TTCTTTAGCG TCATAGAATC 
    TTTCAACTTT TTATTAACCA ACCACTGCCT TCACAAAACT ATTTTAGTAG 
    TATGGAATGA ATACAAACAA AAAATTGTCC TAAGATAGTT ATTTTATTCC 
    ATAGGATATG AATTGGATAC AATTATATTG TATTTATGTA TGATATTTTT 
    GGAATTAACC AAATTTATAA TTTAATACTT CACCGCCATA CTAATCCTTT 
    AATCACGGGA TGTTTAAAGA AGAATGTCAC CGTGAACGAC ATCTCAACCG 
    AACGAATAAA CCATTTCACA GTTATGTTTA TACTATGGTT ATCTTTTTCG 
    CTTAAGGTAC TAGTATTCCA AAAAAAAANT TTTTTTTTNT NTNTNTAAAA 
    GGGGTAAATT NAAATTTATN NAATATCATC CGTTTTNNGT TNCCCATNAA 
    ATTTTTTTTT TTAANNNNNN TTCCCNTTTT TTTAAAANGG NAAAAAAAAA 
    ANCNANGGGN NANCCCNCCN AANGGGGGGG GGGNTNNAAA ANCNAANAAA 
    GGGGGTTTTT NGGGGNNNNA AAAAANTTTA ACCTNNNNGG GNAAATNNCC 
    NCNGGGGGNG NAACCNGGNN NNNTNTNNNA

AT1G22990.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G71050.1); Has 1142 Blast hits to 1079 proteins in 46 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 13; Plants - 1123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23000.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G06130.1); Has 2286 Blast hits to 2008 proteins in 133 species: Archae - 0; Bacteria - 60; Metazoa - 111; Fungi - 41; Plants - 1285; Viruses - 0; Other Eukaryotes - 789 (source: NCBI BLink).
Link
InterPro Scan - TAIR