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52-0290-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8912644 [Map]; Strand: w
      • AT5G25590.1 - [+] show detail - Protein of unknown function (DUF630 and DUF632)
        Distance: -2724; Region: intergenic
      • AT5G25600.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: nucleic acid binding;zinc ion bin...
        Distance: 315; Region: intergenic
    Flanking Genome Sequence: 52-0290-1 - 5-prime edge 
    GTAGCAGTGG TGGAAGACAA ACATCCTGAC ATCTCAAGAA GAACAACAAA 
    ACGAAAAACA AGTTTCGTAG TTGAACTTAA AGTTTCCATC TTATGTGTAA 
    GTCAAGTGAG CNTTCTTGCA TACCAACATG TCAAACGACC AAGAACTATC 
    AGTAGCAGAG TCTTTCTGTG AGATAAACCT TTCAAAAGTG TAACACTATC 
    AAGCAGCTGC AAGTAGAACA AAAAGTGACA GAAACCTGAA GCAATCAAAG 
    AGAGATTGCC CATCCAAAAG CCTGAAAAGA AACTATGTTT CCTAAGTACT 
    AAGAACTTAC TAAAAACCAG AACCTTACCC CAAAAAGTGT AAGTCACAGA 
    GTATAAGGGT ATGTTATACT CTGAGGAGCA ACAGTCATAG CAGATCTATG 
    GTGTGTTATC AGACTCCGAA TAAAACCTTA CTCCATAATC TTTGCGATAT 
    TGTTTCTTCT TTTTATCAGG AGTAAGGTCA ATCTGCTTTC CTTTTCTGCG 
    TTTAGAACTC TCACCACATG CATATCTTGA TTGATCATTA ATAGCAGTAG 
    GAGTGGTGGA ATCATCAGAG AGAGCTTTAG GACTTACTAA TGGAACACTT 
    GAAGGAAGAT GTTCAATAGC ANGTTCATTC AAGTCTAAAC CCGGTGAAGC 
    AGAGGTTGGT GCCTGTGATA TANGTCTGTG AGAAGAGATA TTANAACTGN 
    AGAGTGATTC CANG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8912528 [Map]; Strand: w
      • AT5G25590.1 - [+] show detail - Protein of unknown function (DUF630 and DUF632)
        Distance: -2608; Region: intergenic
      • AT5G25600.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: nucleic acid binding;zinc ion bin...
        Distance: 431; Region: intergenic
    Flanking Genome Sequence: 52-0290-1 - 3-prime edge 
    ACTGCTACCA CGTCTGGCCC TCTCCTTTGG TAGTCGTCTC TGTTTTGTAC 
    ATAAAACCTT AATCAGTTTG TTGTTTCCTT AACTAGTCTT GTAATATTTG 
    TTATTTGCTT TCTTCATCTA GACGTCCTTG TTTTATATAA ACAGTCTATG 
    TATGTTGTAT TGTACAATGT TTAATATCAA TAACAACACC TTTTGGCAAA 
    AAAAAAAAAA ANNGGGNANT TTNGGNAAAA NCNTNAAAAA NNGGGGGGGG 
    GGNAAAAAAN AAAAANNNNN NCTTTTTTTN AAAAANCCCC NANNNNCCCN 
    GAAANNTNGG GGGGGGGGGG GGTTNAAAAN NNNAAAACCN GNCCNAANCN 
    AAAACCCCCN NAAANTTTTT TTTNNTTNAA AAAAAACCCN AATTNGNNAA 
    AAANGNTNGG AANNNAAAAA NNNGGGGCCN NTTNAAAACC CGANNNGCCN 
    NNNNTTGNNC CTTGNCCCNN NAAANGGTNG NAAAANTAAN NNNTNNAANT 
    NGGAAAAAGG NAAAAAANTN NTTNGGGCTT TNNGNNAAAA AAANTGGGNN 
    CGNNCCCAAA AAAAAANGGG GGTNAAAAAA NGNNAANTAN CNNCCNGGGN 
    CGGNAACNNC GGGGNCNCNT ANANAAA

AT5G25590.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF630 and DUF632)
Computational Description
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52320.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25600.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: nucleic acid binding;zinc ion binding (TAIR:AT5G36228.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR